Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | GPY10_RS11230 | Genome accession | NZ_CP046767 |
| Coordinates | 2401155..2401667 (+) | Length | 170 a.a. |
| NCBI ID | WP_158151665.1 | Uniprot ID | - |
| Organism | Vibrio fluvialis strain 2013V-1300 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2396155..2406667
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY10_RS11210 | - | 2396375..2398855 (-) | 2481 | WP_158151662.1 | penicillin-binding protein 1A | - |
| GPY10_RS11215 | pilM | 2398998..2400002 (+) | 1005 | WP_158151663.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPY10_RS11220 | pilN | 2399992..2400582 (+) | 591 | WP_158151664.1 | PilN domain-containing protein | Machinery gene |
| GPY10_RS11225 | pilO | 2400575..2401165 (+) | 591 | WP_020429291.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPY10_RS11230 | pilP | 2401155..2401667 (+) | 513 | WP_158151665.1 | pilus assembly protein PilP | Machinery gene |
| GPY10_RS11235 | pilQ | 2401692..2403428 (+) | 1737 | WP_233275337.1 | type IV pilus secretin PilQ | Machinery gene |
| GPY10_RS11240 | aroK | 2403616..2404134 (+) | 519 | WP_004728569.1 | shikimate kinase AroK | - |
| GPY10_RS11245 | aroB | 2404162..2405247 (+) | 1086 | WP_024374091.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 19084.04 Da Isoelectric Point: 10.0588
>NTDB_id=407425 GPY10_RS11230 WP_158151665.1 2401155..2401667(+) (pilP) [Vibrio fluvialis strain 2013V-1300]
MKNKRCWLLGALLLSGCKANQESLSDYVKHVEQQAQREVATLAPVVQFDVFHYAQHHQREPFVLPQEALVQNQPRMKSDC
WQPSPRAKSGSLERYPLSQLRLRGVMSSGGSVSALIQTPQGSVMKIKAGQYLGLNNGRVTRVADDYLLIKETLPDGLGCW
NQRNVKLVLK
MKNKRCWLLGALLLSGCKANQESLSDYVKHVEQQAQREVATLAPVVQFDVFHYAQHHQREPFVLPQEALVQNQPRMKSDC
WQPSPRAKSGSLERYPLSQLRLRGVMSSGGSVSALIQTPQGSVMKIKAGQYLGLNNGRVTRVADDYLLIKETLPDGLGCW
NQRNVKLVLK
Nucleotide
Download Length: 513 bp
>NTDB_id=407425 GPY10_RS11230 WP_158151665.1 2401155..2401667(+) (pilP) [Vibrio fluvialis strain 2013V-1300]
ATGAAAAATAAGCGCTGCTGGCTGTTAGGAGCACTACTGCTCAGTGGTTGTAAAGCCAATCAGGAGTCGCTGTCCGATTA
CGTTAAACACGTCGAACAGCAGGCGCAGCGTGAAGTGGCGACACTGGCTCCGGTAGTTCAGTTCGACGTGTTTCATTATG
CCCAACATCATCAGCGTGAGCCGTTTGTCTTGCCTCAGGAAGCGCTGGTGCAAAACCAGCCGCGAATGAAATCGGATTGC
TGGCAACCTTCACCGCGCGCCAAAAGTGGTTCGCTGGAGCGTTACCCTCTCAGTCAACTGCGTTTACGTGGTGTCATGAG
CAGTGGTGGCTCTGTCTCCGCGTTGATTCAAACGCCGCAAGGTTCGGTAATGAAAATTAAAGCAGGACAGTACCTGGGAT
TGAACAACGGTCGAGTGACCCGCGTGGCAGACGATTATCTGCTGATCAAAGAGACCCTGCCGGATGGATTGGGATGTTGG
AATCAACGCAACGTTAAATTGGTTTTGAAATAA
ATGAAAAATAAGCGCTGCTGGCTGTTAGGAGCACTACTGCTCAGTGGTTGTAAAGCCAATCAGGAGTCGCTGTCCGATTA
CGTTAAACACGTCGAACAGCAGGCGCAGCGTGAAGTGGCGACACTGGCTCCGGTAGTTCAGTTCGACGTGTTTCATTATG
CCCAACATCATCAGCGTGAGCCGTTTGTCTTGCCTCAGGAAGCGCTGGTGCAAAACCAGCCGCGAATGAAATCGGATTGC
TGGCAACCTTCACCGCGCGCCAAAAGTGGTTCGCTGGAGCGTTACCCTCTCAGTCAACTGCGTTTACGTGGTGTCATGAG
CAGTGGTGGCTCTGTCTCCGCGTTGATTCAAACGCCGCAAGGTTCGGTAATGAAAATTAAAGCAGGACAGTACCTGGGAT
TGAACAACGGTCGAGTGACCCGCGTGGCAGACGATTATCTGCTGATCAAAGAGACCCTGCCGGATGGATTGGGATGTTGG
AATCAACGCAACGTTAAATTGGTTTTGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
69.186 |
100 |
0.7 |
| pilP | Vibrio campbellii strain DS40M4 |
54.386 |
100 |
0.547 |