Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GPY10_RS11225 | Genome accession | NZ_CP046767 |
| Coordinates | 2400575..2401165 (+) | Length | 196 a.a. |
| NCBI ID | WP_020429291.1 | Uniprot ID | A0AAX2LK04 |
| Organism | Vibrio fluvialis strain 2013V-1300 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2395575..2406165
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY10_RS11210 | - | 2396375..2398855 (-) | 2481 | WP_158151662.1 | penicillin-binding protein 1A | - |
| GPY10_RS11215 | pilM | 2398998..2400002 (+) | 1005 | WP_158151663.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPY10_RS11220 | pilN | 2399992..2400582 (+) | 591 | WP_158151664.1 | PilN domain-containing protein | Machinery gene |
| GPY10_RS11225 | pilO | 2400575..2401165 (+) | 591 | WP_020429291.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPY10_RS11230 | pilP | 2401155..2401667 (+) | 513 | WP_158151665.1 | pilus assembly protein PilP | Machinery gene |
| GPY10_RS11235 | pilQ | 2401692..2403428 (+) | 1737 | WP_233275337.1 | type IV pilus secretin PilQ | Machinery gene |
| GPY10_RS11240 | aroK | 2403616..2404134 (+) | 519 | WP_004728569.1 | shikimate kinase AroK | - |
| GPY10_RS11245 | aroB | 2404162..2405247 (+) | 1086 | WP_024374091.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22722.10 Da Isoelectric Point: 4.7023
>NTDB_id=407424 GPY10_RS11225 WP_020429291.1 2400575..2401165(+) (pilO) [Vibrio fluvialis strain 2013V-1300]
MANLQELELDEIAEWPLLPQLAVLLLLVLALQGAGYWLYMLPKQDALEGLKQQEQTLKSTIRIKASKVATLPKLKTQLDE
LAERYDFLLRQLPVQKELASMLASVNELGLENTLTFTRIDWGEKQNQEFLYRLPLNIELTGNYHNIGDFSEAIARLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVSDEK
MANLQELELDEIAEWPLLPQLAVLLLLVLALQGAGYWLYMLPKQDALEGLKQQEQTLKSTIRIKASKVATLPKLKTQLDE
LAERYDFLLRQLPVQKELASMLASVNELGLENTLTFTRIDWGEKQNQEFLYRLPLNIELTGNYHNIGDFSEAIARLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVSDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=407424 GPY10_RS11225 WP_020429291.1 2400575..2401165(+) (pilO) [Vibrio fluvialis strain 2013V-1300]
ATGGCTAACTTGCAGGAACTGGAACTGGATGAAATCGCTGAATGGCCTTTGTTGCCTCAGCTGGCCGTGTTGTTACTGCT
GGTTCTGGCTCTGCAAGGTGCGGGCTATTGGTTATATATGTTGCCCAAGCAGGATGCGCTCGAAGGTTTAAAACAGCAGG
AACAAACGCTCAAATCGACGATACGTATCAAAGCCAGCAAAGTGGCCACATTACCCAAACTCAAAACCCAACTGGATGAA
CTGGCAGAACGGTATGACTTCCTGCTGCGTCAACTGCCGGTGCAAAAAGAGCTTGCCAGTATGCTGGCGTCGGTTAACGA
GCTGGGGCTGGAAAATACGCTGACGTTCACGCGGATTGACTGGGGGGAGAAGCAGAATCAGGAGTTCCTCTATCGTCTGC
CACTCAATATCGAACTGACCGGCAATTATCACAACATCGGCGACTTTTCCGAAGCGATTGCGCGCTTGCCACGCATCATC
AACTTTGACGATGTCGATTGGCAGCGCGTCAGTCAGGAGAGCAGCACGCTGCACTTTCGCGTCCGCGCTTACACCTATCA
GTTCAAACCGGAGGTGAGCGATGAAAAATAA
ATGGCTAACTTGCAGGAACTGGAACTGGATGAAATCGCTGAATGGCCTTTGTTGCCTCAGCTGGCCGTGTTGTTACTGCT
GGTTCTGGCTCTGCAAGGTGCGGGCTATTGGTTATATATGTTGCCCAAGCAGGATGCGCTCGAAGGTTTAAAACAGCAGG
AACAAACGCTCAAATCGACGATACGTATCAAAGCCAGCAAAGTGGCCACATTACCCAAACTCAAAACCCAACTGGATGAA
CTGGCAGAACGGTATGACTTCCTGCTGCGTCAACTGCCGGTGCAAAAAGAGCTTGCCAGTATGCTGGCGTCGGTTAACGA
GCTGGGGCTGGAAAATACGCTGACGTTCACGCGGATTGACTGGGGGGAGAAGCAGAATCAGGAGTTCCTCTATCGTCTGC
CACTCAATATCGAACTGACCGGCAATTATCACAACATCGGCGACTTTTCCGAAGCGATTGCGCGCTTGCCACGCATCATC
AACTTTGACGATGTCGATTGGCAGCGCGTCAGTCAGGAGAGCAGCACGCTGCACTTTCGCGTCCGCGCTTACACCTATCA
GTTCAAACCGGAGGTGAGCGATGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
79.592 |
100 |
0.796 |
| pilO | Vibrio campbellii strain DS40M4 |
68.947 |
96.939 |
0.668 |