Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GO998_RS14510 | Genome accession | NZ_CP046729 |
| Coordinates | 3081926..3082432 (-) | Length | 168 a.a. |
| NCBI ID | WP_211903964.1 | Uniprot ID | - |
| Organism | Ralstonia syzygii strain LLRS-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3076926..3087432
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GO998_RS14490 (GO998_14505) | - | 3077174..3077761 (+) | 588 | WP_075465277.1 | DUF2946 family protein | - |
| GO998_RS14495 (GO998_14510) | - | 3077780..3079468 (-) | 1689 | WP_211903963.1 | tetratricopeptide repeat protein | - |
| GO998_RS14500 (GO998_14515) | moaC | 3079563..3080039 (+) | 477 | WP_075465279.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
| GO998_RS14505 (GO998_14520) | - | 3080113..3081849 (-) | 1737 | WP_075465280.1 | PglL family O-oligosaccharyltransferase | - |
| GO998_RS14510 (GO998_14525) | pilA | 3081926..3082432 (-) | 507 | WP_211903964.1 | pilin | Machinery gene |
| GO998_RS14515 (GO998_14530) | pilA | 3082695..3083216 (-) | 522 | WP_075465282.1 | pilin | Machinery gene |
| GO998_RS14520 (GO998_14535) | - | 3083415..3084113 (-) | 699 | WP_211903965.1 | TerC family protein | - |
| GO998_RS14525 (GO998_14540) | sucD | 3084268..3085149 (-) | 882 | WP_013213430.1 | succinate--CoA ligase subunit alpha | - |
| GO998_RS14530 (GO998_14545) | sucC | 3085234..3086400 (-) | 1167 | WP_211903966.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| GO998_RS14535 (GO998_14550) | - | 3086468..3087094 (-) | 627 | WP_211903967.1 | DUF2889 domain-containing protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 16942.56 Da Isoelectric Point: 9.9749
>NTDB_id=406778 GO998_RS14510 WP_211903964.1 3081926..3082432(-) (pilA) [Ralstonia syzygii strain LLRS-1]
MKSMRHLNKRVQKGFTLIELMIVVAIVGILAAIAIPAYQDYTIRARVTEGLSLAAQAKSLVAENAANAQTDLSVGSSTFA
ATKNVSNLAINATAAPAGQITITYTTAAGNGTLALVPTSGGSALVVSSAPGAAIMWTCYSAGKATAASSVAASPSATLLP
KYAPAECR
MKSMRHLNKRVQKGFTLIELMIVVAIVGILAAIAIPAYQDYTIRARVTEGLSLAAQAKSLVAENAANAQTDLSVGSSTFA
ATKNVSNLAINATAAPAGQITITYTTAAGNGTLALVPTSGGSALVVSSAPGAAIMWTCYSAGKATAASSVAASPSATLLP
KYAPAECR
Nucleotide
Download Length: 507 bp
>NTDB_id=406778 GO998_RS14510 WP_211903964.1 3081926..3082432(-) (pilA) [Ralstonia syzygii strain LLRS-1]
ATGAAGTCGATGCGTCATCTCAACAAGCGTGTCCAGAAGGGCTTCACGCTGATCGAACTGATGATCGTGGTCGCGATCGT
CGGTATTCTGGCTGCGATTGCCATTCCGGCCTATCAGGACTACACCATCCGTGCACGCGTGACCGAAGGTCTGTCGCTGG
CTGCTCAAGCCAAGTCGCTGGTGGCTGAGAACGCTGCAAACGCTCAGACCGACCTGTCTGTGGGTTCGTCGACGTTTGCG
GCTACCAAGAACGTGTCCAATCTTGCTATTAACGCGACTGCGGCGCCCGCCGGCCAAATCACGATTACGTACACCACTGC
AGCGGGTAACGGTACGCTTGCCCTCGTCCCGACCTCGGGAGGTAGTGCTTTGGTCGTGAGTTCCGCTCCGGGCGCAGCTA
TCATGTGGACCTGCTACTCCGCTGGTAAGGCTACGGCTGCCAGCAGCGTTGCTGCAAGTCCTTCGGCGACCCTGCTGCCG
AAGTACGCTCCGGCAGAATGCCGCTAA
ATGAAGTCGATGCGTCATCTCAACAAGCGTGTCCAGAAGGGCTTCACGCTGATCGAACTGATGATCGTGGTCGCGATCGT
CGGTATTCTGGCTGCGATTGCCATTCCGGCCTATCAGGACTACACCATCCGTGCACGCGTGACCGAAGGTCTGTCGCTGG
CTGCTCAAGCCAAGTCGCTGGTGGCTGAGAACGCTGCAAACGCTCAGACCGACCTGTCTGTGGGTTCGTCGACGTTTGCG
GCTACCAAGAACGTGTCCAATCTTGCTATTAACGCGACTGCGGCGCCCGCCGGCCAAATCACGATTACGTACACCACTGC
AGCGGGTAACGGTACGCTTGCCCTCGTCCCGACCTCGGGAGGTAGTGCTTTGGTCGTGAGTTCCGCTCCGGGCGCAGCTA
TCATGTGGACCTGCTACTCCGCTGGTAAGGCTACGGCTGCCAGCAGCGTTGCTGCAAGTCCTTCGGCGACCCTGCTGCCG
AAGTACGCTCCGGCAGAATGCCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
79.167 |
100 |
0.792 |
| pilA2 | Legionella pneumophila str. Paris |
52.174 |
95.833 |
0.5 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
52.174 |
95.833 |
0.5 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
37.306 |
100 |
0.429 |
| comP | Acinetobacter baylyi ADP1 |
42.012 |
100 |
0.423 |