Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GO999_RS13830 | Genome accession | NZ_CP046674 |
| Coordinates | 3013908..3014417 (-) | Length | 169 a.a. |
| NCBI ID | WP_111374451.1 | Uniprot ID | - |
| Organism | Ralstonia nicotianae strain RS | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3008908..3019417
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GO999_RS13810 (GO999_13810) | - | 3008989..3009576 (+) | 588 | WP_211906317.1 | DUF2946 family protein | - |
| GO999_RS13815 (GO999_13815) | - | 3009591..3011279 (-) | 1689 | WP_211906318.1 | M48 family metallopeptidase | - |
| GO999_RS13820 (GO999_13820) | moaC | 3011373..3011849 (+) | 477 | WP_071011469.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
| GO999_RS13825 (GO999_13825) | - | 3012077..3013810 (-) | 1734 | WP_111374452.1 | PglL family O-oligosaccharyltransferase | - |
| GO999_RS13830 (GO999_13830) | pilA | 3013908..3014417 (-) | 510 | WP_111374451.1 | pilin | Machinery gene |
| GO999_RS13835 (GO999_13835) | pilA | 3014684..3015205 (-) | 522 | WP_011000516.1 | pilin | Machinery gene |
| GO999_RS13840 (GO999_13840) | - | 3015399..3016097 (-) | 699 | WP_019717569.1 | TerC family protein | - |
| GO999_RS13845 (GO999_13845) | sucD | 3016247..3017128 (-) | 882 | WP_011000514.1 | succinate--CoA ligase subunit alpha | - |
| GO999_RS13850 (GO999_13850) | sucC | 3017213..3018379 (-) | 1167 | WP_011000513.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| GO999_RS13855 (GO999_13855) | - | 3018446..3019072 (-) | 627 | WP_197360772.1 | DUF2889 domain-containing protein | - |
Sequence
Protein
Download Length: 169 a.a. Molecular weight: 17251.99 Da Isoelectric Point: 9.9491
>NTDB_id=406657 GO999_RS13830 WP_111374451.1 3013908..3014417(-) (pilA) [Ralstonia nicotianae strain RS]
MKSMRHLNKRVQKGFTLIELMIVVAIVGILAAIAIPAYQDYTVRARVTEGLSLAAQAKALVSENAANAQSDLSVGSSVFT
ATKNVANLQILGTDATAPGQITVTYTTAAGGGTLALVPTAAGAKLPLSSAPSGPIMWTCYAQNKATAASSVPPSGTMTLA
AKYAPAECR
MKSMRHLNKRVQKGFTLIELMIVVAIVGILAAIAIPAYQDYTVRARVTEGLSLAAQAKALVSENAANAQSDLSVGSSVFT
ATKNVANLQILGTDATAPGQITVTYTTAAGGGTLALVPTAAGAKLPLSSAPSGPIMWTCYAQNKATAASSVPPSGTMTLA
AKYAPAECR
Nucleotide
Download Length: 510 bp
>NTDB_id=406657 GO999_RS13830 WP_111374451.1 3013908..3014417(-) (pilA) [Ralstonia nicotianae strain RS]
ATGAAGTCGATGCGTCATCTCAACAAGCGTGTCCAGAAGGGTTTCACGCTGATCGAACTGATGATCGTGGTCGCGATCGT
CGGTATTCTGGCTGCGATTGCCATTCCGGCCTATCAGGACTACACGGTTCGTGCACGCGTGACGGAAGGTCTGTCGCTGG
CTGCACAAGCCAAGGCACTGGTGTCGGAAAACGCTGCCAATGCACAGTCTGACCTGTCGGTGGGTTCGTCGGTGTTCACG
GCCACCAAGAACGTTGCCAACCTCCAGATCCTCGGTACGGATGCTACTGCTCCGGGCCAGATCACCGTTACCTATACGAC
GGCAGCTGGCGGCGGCACGCTGGCTCTGGTTCCGACTGCGGCAGGCGCTAAGCTGCCGTTGAGCTCCGCACCGTCGGGCC
CGATCATGTGGACCTGCTACGCTCAAAACAAGGCCACTGCTGCCAGCAGCGTTCCTCCGAGTGGTACGATGACGCTGGCG
GCCAAGTATGCCCCGGCAGAATGCCGCTAA
ATGAAGTCGATGCGTCATCTCAACAAGCGTGTCCAGAAGGGTTTCACGCTGATCGAACTGATGATCGTGGTCGCGATCGT
CGGTATTCTGGCTGCGATTGCCATTCCGGCCTATCAGGACTACACGGTTCGTGCACGCGTGACGGAAGGTCTGTCGCTGG
CTGCACAAGCCAAGGCACTGGTGTCGGAAAACGCTGCCAATGCACAGTCTGACCTGTCGGTGGGTTCGTCGGTGTTCACG
GCCACCAAGAACGTTGCCAACCTCCAGATCCTCGGTACGGATGCTACTGCTCCGGGCCAGATCACCGTTACCTATACGAC
GGCAGCTGGCGGCGGCACGCTGGCTCTGGTTCCGACTGCGGCAGGCGCTAAGCTGCCGTTGAGCTCCGCACCGTCGGGCC
CGATCATGTGGACCTGCTACGCTCAAAACAAGGCCACTGCTGCCAGCAGCGTTCCTCCGAGTGGTACGATGACGCTGGCG
GCCAAGTATGCCCCGGCAGAATGCCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
92.899 |
100 |
0.929 |
| pilA2 | Legionella pneumophila str. Paris |
50.617 |
95.858 |
0.485 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
50 |
95.858 |
0.479 |
| comP | Acinetobacter baylyi ADP1 |
43.787 |
100 |
0.438 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
36.979 |
100 |
0.42 |