Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HALHY_RS02550 | Genome accession | NC_015510 |
| Coordinates | 652466..652804 (+) | Length | 112 a.a. |
| NCBI ID | WP_013762980.1 | Uniprot ID | F4KZC1 |
| Organism | Haliscomenobacter hydrossis DSM 1100 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 647784..693223 | 652466..652804 | within | 0 |
Gene organization within MGE regions
Location: 647784..693223
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HALHY_RS02520 (Halhy_0500) | - | 647784..648227 (+) | 444 | WP_013762974.1 | hypothetical protein | - |
| HALHY_RS02525 (Halhy_0501) | - | 648265..648705 (+) | 441 | WP_013762975.1 | hypothetical protein | - |
| HALHY_RS02530 (Halhy_0502) | - | 648802..649539 (+) | 738 | WP_013762976.1 | ATP-grasp domain-containing protein | - |
| HALHY_RS02535 (Halhy_0503) | - | 649735..650022 (+) | 288 | WP_044233405.1 | helix-turn-helix domain-containing protein | - |
| HALHY_RS02540 (Halhy_0504) | - | 650022..651242 (+) | 1221 | WP_013762978.1 | type II toxin-antitoxin system HipA family toxin | - |
| HALHY_RS02545 (Halhy_0505) | - | 651375..652442 (+) | 1068 | WP_013762979.1 | tyrosine-type recombinase/integrase | - |
| HALHY_RS02550 (Halhy_0506) | ssb | 652466..652804 (+) | 339 | WP_013762980.1 | single-stranded DNA-binding protein | Machinery gene |
| HALHY_RS02555 (Halhy_0507) | - | 653065..654876 (+) | 1812 | WP_013762981.1 | GmrSD restriction endonuclease domain-containing protein | - |
| HALHY_RS34380 (Halhy_0508) | - | 655048..655728 (+) | 681 | WP_013762982.1 | hypothetical protein | - |
| HALHY_RS02565 (Halhy_0509) | - | 655969..656895 (+) | 927 | WP_013762983.1 | restriction endonuclease | - |
| HALHY_RS02570 (Halhy_0511) | - | 657072..657725 (+) | 654 | WP_013762985.1 | DUF2490 domain-containing protein | - |
| HALHY_RS02575 (Halhy_0512) | - | 657785..658525 (+) | 741 | WP_013762986.1 | carbonic anhydrase family protein | - |
| HALHY_RS02585 (Halhy_0514) | - | 658745..659704 (+) | 960 | WP_013762988.1 | hypothetical protein | - |
| HALHY_RS02590 (Halhy_0515) | - | 659718..661574 (+) | 1857 | WP_013762989.1 | hypothetical protein | - |
| HALHY_RS02595 (Halhy_0516) | - | 661585..661830 (+) | 246 | WP_013762990.1 | hypothetical protein | - |
| HALHY_RS02600 (Halhy_0517) | - | 661844..663169 (+) | 1326 | WP_013762991.1 | hypothetical protein | - |
| HALHY_RS02605 (Halhy_0518) | - | 663169..663795 (+) | 627 | WP_148270129.1 | DUF6252 family protein | - |
| HALHY_RS02610 (Halhy_0519) | - | 663901..664389 (+) | 489 | WP_013762993.1 | hypothetical protein | - |
| HALHY_RS02615 (Halhy_0520) | - | 664403..665248 (+) | 846 | WP_148270131.1 | hypothetical protein | - |
| HALHY_RS38350 | - | 665305..665430 (-) | 126 | WP_272867996.1 | hypothetical protein | - |
| HALHY_RS37350 (Halhy_0522) | - | 665450..665587 (+) | 138 | WP_013762996.1 | hypothetical protein | - |
| HALHY_RS36780 | - | 666064..666303 (+) | 240 | WP_148270133.1 | hypothetical protein | - |
| HALHY_RS02620 (Halhy_0524) | - | 666300..666764 (+) | 465 | WP_013762998.1 | hypothetical protein | - |
| HALHY_RS02625 (Halhy_0525) | - | 667050..668675 (-) | 1626 | WP_013762999.1 | sulfatase | - |
| HALHY_RS02630 (Halhy_0526) | - | 668860..669744 (+) | 885 | WP_013763000.1 | XAC2610-related protein | - |
| HALHY_RS37785 (Halhy_0527) | - | 669961..671310 (+) | 1350 | WP_013763001.1 | sulfatase-like hydrolase/transferase | - |
| HALHY_RS02645 (Halhy_0529) | - | 671512..672936 (+) | 1425 | WP_013763003.1 | AAA family ATPase | - |
| HALHY_RS02650 (Halhy_0530) | - | 673227..673538 (-) | 312 | WP_013763004.1 | winged helix-turn-helix transcriptional regulator | - |
| HALHY_RS02655 (Halhy_0531) | - | 673700..674623 (+) | 924 | WP_013763005.1 | ClpXP adapter SpxH family protein | - |
| HALHY_RS02660 (Halhy_0532) | - | 674768..675538 (+) | 771 | WP_013763006.1 | peptidase E | - |
| HALHY_RS02665 (Halhy_0533) | - | 675782..676102 (+) | 321 | WP_013763007.1 | ArsR/SmtB family transcription factor | - |
| HALHY_RS02670 (Halhy_0534) | - | 676099..676599 (+) | 501 | WP_013763008.1 | SRPBCC family protein | - |
| HALHY_RS02675 (Halhy_0536) | - | 677048..677368 (+) | 321 | WP_013763010.1 | ArsR/SmtB family transcription factor | - |
| HALHY_RS02680 (Halhy_0537) | - | 677365..677928 (+) | 564 | WP_013763011.1 | VOC family protein | - |
| HALHY_RS02685 (Halhy_0538) | - | 677999..678412 (+) | 414 | WP_013763012.1 | YybH family protein | - |
| HALHY_RS37790 (Halhy_0539) | - | 678449..678916 (+) | 468 | WP_013763013.1 | hypothetical protein | - |
| HALHY_RS02695 (Halhy_0540) | - | 679048..679923 (+) | 876 | WP_013763014.1 | helix-turn-helix domain-containing protein | - |
| HALHY_RS02700 (Halhy_0541) | - | 680119..680601 (+) | 483 | WP_013763015.1 | cupin domain-containing protein | - |
| HALHY_RS02705 (Halhy_0542) | - | 680750..681973 (+) | 1224 | WP_013763016.1 | TolB family protein | - |
| HALHY_RS02710 (Halhy_0543) | - | 682369..682935 (+) | 567 | WP_013763017.1 | helix-turn-helix domain-containing protein | - |
| HALHY_RS02715 (Halhy_0544) | - | 683274..684182 (-) | 909 | WP_013763018.1 | helix-turn-helix domain-containing protein | - |
| HALHY_RS02720 (Halhy_0545) | - | 684188..685000 (-) | 813 | WP_013763019.1 | oxidoreductase | - |
| HALHY_RS02725 (Halhy_0546) | - | 685216..686619 (+) | 1404 | WP_013763020.1 | RtcB family protein | - |
| HALHY_RS02730 (Halhy_0547) | - | 686682..687467 (+) | 786 | WP_013763021.1 | HipA family kinase | - |
| HALHY_RS02735 (Halhy_0548) | - | 687445..687828 (+) | 384 | WP_013763022.1 | DUF3037 domain-containing protein | - |
| HALHY_RS02740 (Halhy_0549) | - | 688083..689732 (+) | 1650 | WP_013763023.1 | hypothetical protein | - |
| HALHY_RS02745 (Halhy_0550) | - | 689892..690275 (+) | 384 | WP_044234518.1 | response regulator | - |
| HALHY_RS02750 (Halhy_0551) | - | 690378..690809 (+) | 432 | WP_013763025.1 | EthD family reductase | - |
| HALHY_RS02755 (Halhy_0552) | - | 690874..691776 (+) | 903 | WP_169315645.1 | AraC family transcriptional regulator | - |
| HALHY_RS02760 (Halhy_0553) | - | 691847..692284 (+) | 438 | WP_013763027.1 | DUF2141 domain-containing protein | - |
| HALHY_RS02765 (Halhy_0554) | - | 692321..693223 (+) | 903 | WP_013763028.1 | oxidoreductase | - |
Sequence
Protein
Download Length: 112 a.a. Molecular weight: 12777.83 Da Isoelectric Point: 9.6928
>NTDB_id=40663 HALHY_RS02550 WP_013762980.1 652466..652804(+) (ssb) [Haliscomenobacter hydrossis DSM 1100]
MKGLNKVMLIGNLGKDPEVQTLEKNIKVAKFSLATTESFKDDKGQIHTLTDWHSIVLWRGLAELAEKYLHKGSTIYIEGK
NKTRAFEDKQGIKRYVTEIIGEQVLMLDKKES
MKGLNKVMLIGNLGKDPEVQTLEKNIKVAKFSLATTESFKDDKGQIHTLTDWHSIVLWRGLAELAEKYLHKGSTIYIEGK
NKTRAFEDKQGIKRYVTEIIGEQVLMLDKKES
Nucleotide
Download Length: 339 bp
>NTDB_id=40663 HALHY_RS02550 WP_013762980.1 652466..652804(+) (ssb) [Haliscomenobacter hydrossis DSM 1100]
ATGAAAGGATTAAACAAAGTTATGCTGATTGGCAACCTGGGCAAAGACCCCGAAGTGCAAACCTTGGAAAAAAACATCAA
AGTTGCCAAGTTCTCCTTAGCCACCACCGAAAGCTTTAAAGACGATAAAGGGCAAATCCACACGTTGACGGATTGGCACA
GCATCGTGCTGTGGCGTGGGCTGGCTGAATTGGCCGAGAAATACCTCCACAAAGGCAGCACAATCTACATAGAGGGCAAA
AACAAAACCCGTGCTTTTGAAGACAAGCAAGGGATCAAGCGCTACGTGACCGAAATCATCGGAGAACAAGTGCTGATGCT
GGACAAAAAAGAGTCGTAA
ATGAAAGGATTAAACAAAGTTATGCTGATTGGCAACCTGGGCAAAGACCCCGAAGTGCAAACCTTGGAAAAAAACATCAA
AGTTGCCAAGTTCTCCTTAGCCACCACCGAAAGCTTTAAAGACGATAAAGGGCAAATCCACACGTTGACGGATTGGCACA
GCATCGTGCTGTGGCGTGGGCTGGCTGAATTGGCCGAGAAATACCTCCACAAAGGCAGCACAATCTACATAGAGGGCAAA
AACAAAACCCGTGCTTTTGAAGACAAGCAAGGGATCAAGCGCTACGTGACCGAAATCATCGGAGAACAAGTGCTGATGCT
GGACAAAAAAGAGTCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
47.788 |
100 |
0.482 |
| ssb | Neisseria gonorrhoeae MS11 |
44.231 |
92.857 |
0.411 |
| ssb | Neisseria meningitidis MC58 |
44.231 |
92.857 |
0.411 |
| ssb | Vibrio cholerae strain A1552 |
46 |
89.286 |
0.411 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
37.615 |
97.321 |
0.366 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
39.806 |
91.964 |
0.366 |