Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GPA07_RS18585 Genome accession   NZ_CP046653
Coordinates   696228..696884 (+) Length   218 a.a.
NCBI ID   WP_008360195.1    Uniprot ID   -
Organism   Bacillus sp. ms-22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 691228..701884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS03565 (GPA07_03565) degS 691360..692535 (+) 1176 WP_008360205.1 sensor histidine kinase Regulator
  GPA07_RS03570 (GPA07_03570) degU 692600..693289 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  GPA07_RS03575 (GPA07_03575) - 693502..694344 (+) 843 WP_157292039.1 DegV family protein -
  GPA07_RS03580 (GPA07_03580) comFA 694464..695843 (+) 1380 WP_145939407.1 DEAD/DEAH box helicase Machinery gene
  GPA07_RS03585 (GPA07_03585) - 695908..696201 (+) 294 WP_008360197.1 competence protein ComFB -
  GPA07_RS18585 (GPA07_03590) comFC 696228..696884 (+) 657 WP_008360195.1 ComF family protein Machinery gene
  GPA07_RS03595 (GPA07_03595) - 696941..697360 (+) 420 WP_008360193.1 TIGR03826 family flagellar region protein -
  GPA07_RS03600 (GPA07_03600) flgM 697440..697703 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  GPA07_RS03605 (GPA07_03605) - 697722..698204 (+) 483 WP_008360191.1 flagellar protein FlgN -
  GPA07_RS03610 (GPA07_03610) flgK 698220..699740 (+) 1521 WP_008360189.1 flagellar hook-associated protein FlgK -
  GPA07_RS03615 (GPA07_03615) flgL 699749..700660 (+) 912 WP_008360187.1 flagellar hook-associated protein FlgL -
  GPA07_RS03620 (GPA07_03620) - 700708..701286 (+) 579 WP_008360185.1 DUF6470 family protein -
  GPA07_RS03625 (GPA07_03625) fliW 701315..701749 (+) 435 WP_008360183.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24953.11 Da        Isoelectric Point: 10.3595

>NTDB_id=406457 GPA07_RS18585 WP_008360195.1 696228..696884(+) (comFC) [Bacillus sp. ms-22]
MAAFTWKSFLLSNEDRLCVACKRKLTKIDSPICPKCGRVQSDDHLCHDCSRWNKRTDSEEVLEKNRSVYVYNDFMKDVLA
RFKFRGDTALAELFKRDVQAVFKRSFSIKEPVLVPIPLSKERLKERGFNQSVMLASMIGGPIFQPLIKVHQRKQSKKSKN
DRLNQKGLFQLKQPDPIVLKDVILVDDIYTTGATVYHAARILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 657 bp        

>NTDB_id=406457 GPA07_RS18585 WP_008360195.1 696228..696884(+) (comFC) [Bacillus sp. ms-22]
GTGGCTGCTTTTACATGGAAGTCATTTCTTCTATCAAATGAAGATCGTTTATGTGTAGCATGTAAGAGGAAGCTAACGAA
GATTGACAGTCCTATTTGCCCCAAATGCGGAAGAGTACAGTCAGATGACCATTTGTGCCATGATTGTTCACGGTGGAATA
AACGAACTGATTCTGAGGAAGTCCTTGAGAAGAATAGGTCTGTTTATGTTTACAACGATTTTATGAAAGATGTTCTAGCA
CGATTTAAATTCCGAGGTGATACGGCTTTAGCTGAGCTATTTAAAAGAGATGTACAAGCAGTGTTTAAACGCTCTTTTTC
AATCAAAGAGCCTGTGCTTGTCCCAATTCCTTTGAGTAAAGAGAGGCTAAAGGAAAGAGGATTCAATCAGTCGGTAATGC
TTGCTTCCATGATTGGTGGACCTATATTCCAGCCACTCATTAAAGTACATCAAAGGAAGCAGTCAAAGAAAAGCAAAAAT
GATCGTTTAAATCAAAAGGGTTTGTTCCAATTAAAACAGCCAGATCCGATCGTTCTAAAGGATGTCATATTAGTTGATGA
TATTTATACAACCGGGGCGACAGTCTACCATGCGGCAAGAATTTTAAAAGACGCAGGTGCCAAAAGCGTTTCCTCTTTTA
CGTTGATTCGCAGTTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(13-49)

Phosphoribosyl transferase domain (Pribosyltran)

(179-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

49.537

99.083

0.491
  comFC/cflB Streptococcus mitis NCTC 12261

37.443

100

0.376
  comFC/cflB Streptococcus mitis SK321

36.697

100

0.367

Multiple sequence alignment