Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GPA07_RS03570 Genome accession   NZ_CP046653
Coordinates   692600..693289 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. ms-22     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 687600..698289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS03550 (GPA07_03550) - 688642..689281 (-) 640 Protein_680 IS3 family transposase -
  GPA07_RS03555 (GPA07_03555) - 689396..690487 (-) 1092 WP_008360210.1 LCP family protein -
  GPA07_RS03560 (GPA07_03560) - 690472..691140 (-) 669 WP_157292038.1 YigZ family protein -
  GPA07_RS03565 (GPA07_03565) degS 691360..692535 (+) 1176 WP_008360205.1 sensor histidine kinase Regulator
  GPA07_RS03570 (GPA07_03570) degU 692600..693289 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  GPA07_RS03575 (GPA07_03575) - 693502..694344 (+) 843 WP_157292039.1 DegV family protein -
  GPA07_RS03580 (GPA07_03580) comFA 694464..695843 (+) 1380 WP_145939407.1 DEAD/DEAH box helicase Machinery gene
  GPA07_RS03585 (GPA07_03585) - 695908..696201 (+) 294 WP_008360197.1 competence protein ComFB -
  GPA07_RS18585 (GPA07_03590) comFC 696228..696884 (+) 657 WP_008360195.1 ComF family protein Machinery gene
  GPA07_RS03595 (GPA07_03595) - 696941..697360 (+) 420 WP_008360193.1 TIGR03826 family flagellar region protein -
  GPA07_RS03600 (GPA07_03600) flgM 697440..697703 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  GPA07_RS03605 (GPA07_03605) - 697722..698204 (+) 483 WP_008360191.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=406409 GPA07_RS03570 WP_008348273.1 692600..693289(+) (degU) [Bacillus sp. ms-22]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=406409 GPA07_RS03570 WP_008348273.1 692600..693289(+) (degU) [Bacillus sp. ms-22]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGCATCGTAGAGCACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAACTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCTTATCTATTCATGACGATGAAAACTATGTGACACATGCTTTAAAGACAGGAGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACCCTCATTGAAGCAGTGAAAGTAGTAGCTGACGGAGGTTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
CGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CACAAGCTGTTGTTGTAGCGATTAAAAACGGTTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment