Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   GPA07_RS03580 Genome accession   NZ_CP046653
Coordinates   694464..695843 (+) Length   459 a.a.
NCBI ID   WP_145939407.1    Uniprot ID   -
Organism   Bacillus sp. ms-22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 689464..700843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS03560 (GPA07_03560) - 690472..691140 (-) 669 WP_157292038.1 YigZ family protein -
  GPA07_RS03565 (GPA07_03565) degS 691360..692535 (+) 1176 WP_008360205.1 sensor histidine kinase Regulator
  GPA07_RS03570 (GPA07_03570) degU 692600..693289 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  GPA07_RS03575 (GPA07_03575) - 693502..694344 (+) 843 WP_157292039.1 DegV family protein -
  GPA07_RS03580 (GPA07_03580) comFA 694464..695843 (+) 1380 WP_145939407.1 DEAD/DEAH box helicase Machinery gene
  GPA07_RS03585 (GPA07_03585) - 695908..696201 (+) 294 WP_008360197.1 competence protein ComFB -
  GPA07_RS18585 (GPA07_03590) comFC 696228..696884 (+) 657 WP_008360195.1 ComF family protein Machinery gene
  GPA07_RS03595 (GPA07_03595) - 696941..697360 (+) 420 WP_008360193.1 TIGR03826 family flagellar region protein -
  GPA07_RS03600 (GPA07_03600) flgM 697440..697703 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  GPA07_RS03605 (GPA07_03605) - 697722..698204 (+) 483 WP_008360191.1 flagellar protein FlgN -
  GPA07_RS03610 (GPA07_03610) flgK 698220..699740 (+) 1521 WP_008360189.1 flagellar hook-associated protein FlgK -
  GPA07_RS03615 (GPA07_03615) flgL 699749..700660 (+) 912 WP_008360187.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52647.45 Da        Isoelectric Point: 10.1188

>NTDB_id=406410 GPA07_RS03580 WP_145939407.1 694464..695843(+) (comFA) [Bacillus sp. ms-22]
MNMKKALELRQQLQSRHLLAFECQCTQSDLDWLEKQGFIDRTHAIERESIGLICCRCGVSNKRYFARSPCETCQKDCLYC
RSCIMMGKVTECGFLYEWTGPHKEETIQAELTWQGELSKGQKRASKRMVEAIKNTSDLLVWAVCGAGKTEVLFHGIEYAL
NKGMSVCIATPRTDVVLELEPRIRKAFQGLDIAALYGGSPQRFQIAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSIDE
RLQFAVVKAMKKTGVRIYLSATPSKKMKKDVVRGQLEAVKIPLRFHQQPLPVPAFQWIGQWRKKLKKNRLPSITMNWLQE
HIKKKKRVLLFVPSISTMKRVTQILRAHHVNVQGVSADDQDRKQKVQHFREHRYDVLVTTTILERGVTIRDVQVGVLGAE
STIFTESALVQISGRAGRHPEYAKGDVFFFHFGLTRSMKKAKKHIEQMNTVAKQEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=406410 GPA07_RS03580 WP_145939407.1 694464..695843(+) (comFA) [Bacillus sp. ms-22]
TTGAACATGAAGAAAGCGCTGGAACTCCGGCAGCAGCTCCAATCACGACACCTTCTTGCTTTTGAATGTCAATGTACACA
GTCTGATTTGGATTGGCTGGAGAAGCAAGGATTTATTGATAGAACACACGCCATTGAAAGAGAATCGATTGGTTTAATAT
GCTGTCGATGCGGTGTATCAAATAAACGATATTTTGCCCGCTCACCGTGTGAAACATGTCAAAAAGACTGTCTATACTGT
AGATCTTGCATCATGATGGGTAAAGTAACTGAATGTGGTTTCCTCTATGAATGGACGGGTCCGCACAAGGAAGAAACAAT
CCAAGCTGAATTGACATGGCAGGGAGAGCTGTCTAAAGGACAAAAGAGGGCGTCAAAAAGAATGGTAGAAGCGATAAAAA
ACACATCTGATTTACTGGTTTGGGCTGTTTGCGGTGCGGGGAAAACGGAGGTGCTTTTTCACGGAATTGAATATGCGTTA
AATAAAGGAATGAGTGTCTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAACTCGAACCACGAATTAGAAAGGCATT
CCAAGGGCTTGATATAGCTGCACTTTATGGCGGAAGTCCTCAAAGATTTCAAATAGCACCGCTAATGATTGCCACAACCC
ATCAACTGATGAGATACAAAAATGCTTTTGATGTCCTCATAGTAGATGAAGTCGATGCCTTTCCTTATTCAATTGATGAA
CGTCTTCAATTTGCTGTTGTTAAGGCCATGAAGAAAACAGGAGTTAGGATTTATTTAAGTGCCACGCCATCTAAAAAAAT
GAAAAAGGATGTGGTTCGTGGACAATTAGAAGCGGTAAAAATTCCTTTGCGTTTTCACCAACAACCGTTGCCTGTCCCAG
CATTTCAATGGATTGGACAATGGAGAAAGAAATTAAAAAAGAATCGGCTGCCATCTATTACAATGAACTGGCTGCAGGAA
CATATCAAAAAGAAAAAAAGGGTTTTACTTTTTGTCCCTTCTATTTCTACTATGAAGAGGGTCACGCAGATCCTTCGAGC
ACATCATGTAAATGTACAGGGTGTTTCTGCCGATGATCAAGATAGGAAACAAAAGGTTCAACACTTCAGAGAGCATAGAT
ATGATGTTCTAGTTACAACAACAATTCTAGAAAGAGGCGTCACCATTCGAGATGTTCAGGTGGGTGTGTTAGGTGCAGAA
TCTACTATTTTTACAGAGAGTGCGCTTGTTCAGATTTCTGGCAGGGCTGGCAGACATCCTGAATACGCTAAAGGAGATGT
GTTCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAAAAAGCGAAGAAGCACATCGAACAAATGAACACGGTGGCTAAAC
AGGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(318-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.933

96.95

0.523

Multiple sequence alignment