Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   GPA00_RS02945 Genome accession   NZ_CP046629
Coordinates   602250..603509 (+) Length   419 a.a.
NCBI ID   WP_033153623.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 597250..608509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS02920 (GPA00_02920) - 598137..600719 (+) 2583 WP_157327490.1 YfhO family protein -
  GPA00_RS02940 (GPA00_02940) rlmH 601558..602037 (-) 480 WP_004233682.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  GPA00_RS02945 (GPA00_02945) htrA 602250..603509 (+) 1260 WP_033153623.1 S1C family serine protease Regulator
  GPA00_RS02950 (GPA00_02950) spo0J 603570..604352 (+) 783 WP_033153625.1 ParB/RepB/Spo0J family partition protein Regulator
  GPA00_RS02955 (GPA00_02955) dnaA 604557..605912 (+) 1356 WP_157327492.1 chromosomal replication initiator protein DnaA -
  GPA00_RS02960 (GPA00_02960) dnaN 606070..607206 (+) 1137 WP_021143391.1 DNA polymerase III subunit beta -
  GPA00_RS02965 (GPA00_02965) - 607337..608221 (+) 885 WP_027968263.1 diacylglycerol/lipid kinase family protein -
  GPA00_RS02970 (GPA00_02970) - 608232..608426 (+) 195 WP_004233691.1 DUF951 domain-containing protein -

Sequence


Protein


Download         Length: 419 a.a.        Molecular weight: 43509.36 Da        Isoelectric Point: 4.4136

>NTDB_id=406286 GPA00_RS02945 WP_033153623.1 602250..603509(+) (htrA) [Streptococcus equinus strain CNU G6]
MKKVNFPKVKSKKILKPLSVILIGFIGGVAGTLLILNMAGISINNVSGSSTKTTTSKVSYSNSNDTTKAVSKVQDAVVSV
INYQSNTSSNDLYAQLFGDNANSNNSTSDDDLNISSEGSGVIYKKDGNSAYVVTNNHVVDGAEQLEIMLSDGTKVVGELV
GADTYSDIAVVKIASDKVSTVAEFADSAKITVGETAIAIGSPLGTDYANSVTQGIVSSLSRTVTMTNDDGETISTNAIQT
DAAINPGNSGGALINIEGQVIGINSSKISSTSSSGESVEGMGFAIPSNDVVKIINQLEENGKVIRPALGITMANLSDLST
VSISHLNIPTSVTGGVVVASVQSGMPAEGTLERYDVITAIDDEEVNSITDLQSILYGHSTGDSVKVTFYRGTTKKTETIK
LTKTTQDLSSSSDSSNQNQ

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=406286 GPA00_RS02945 WP_033153623.1 602250..603509(+) (htrA) [Streptococcus equinus strain CNU G6]
ATGAAAAAAGTCAATTTTCCAAAAGTTAAATCAAAAAAAATTCTCAAGCCGCTGTCTGTCATTTTAATCGGATTCATCGG
AGGTGTAGCTGGGACGCTACTGATTTTAAATATGGCTGGCATTTCGATAAATAACGTTAGCGGTTCAAGCACTAAAACTA
CCACAAGTAAAGTAAGTTATTCAAATTCTAATGATACGACAAAAGCCGTTTCAAAAGTTCAAGACGCTGTCGTATCCGTT
ATTAATTATCAATCAAATACTTCATCAAATGATCTGTACGCTCAATTATTTGGTGATAATGCAAATAGCAACAATTCAAC
ATCTGATGACGATTTAAACATCTCTAGCGAAGGTTCTGGTGTTATTTACAAAAAAGACGGAAATTCTGCCTACGTTGTAA
CAAATAACCACGTCGTTGACGGCGCTGAACAGCTCGAAATCATGCTATCTGATGGTACAAAAGTCGTTGGAGAATTAGTC
GGAGCTGATACTTATTCAGATATCGCTGTTGTCAAAATTGCTTCTGATAAAGTTTCTACCGTTGCTGAATTTGCCGACTC
AGCAAAAATTACTGTCGGAGAAACAGCTATTGCCATTGGTAGCCCGCTTGGAACTGACTACGCAAACTCTGTAACACAAG
GAATTGTCTCAAGTCTAAGTCGTACAGTAACAATGACTAATGACGATGGTGAAACTATCTCAACAAATGCTATCCAAACC
GATGCTGCTATTAACCCAGGTAACTCTGGAGGTGCTTTGATTAATATCGAAGGACAAGTTATCGGTATCAACTCAAGTAA
AATTTCTTCAACATCTAGTTCAGGTGAGTCTGTAGAAGGTATGGGATTTGCCATTCCATCTAATGATGTCGTCAAAATCA
TCAATCAATTGGAAGAAAACGGAAAAGTTATTCGTCCAGCACTTGGTATCACAATGGCTAACTTAAGCGATCTCTCAACT
GTATCTATTAGCCACCTCAACATTCCAACTAGCGTCACTGGTGGTGTTGTTGTTGCTTCAGTACAATCAGGTATGCCTGC
TGAAGGAACTCTTGAAAGATACGATGTCATCACAGCTATTGATGACGAAGAAGTTAACTCAATCACAGACCTTCAAAGTA
TTCTTTACGGACACTCAACTGGAGACTCTGTTAAAGTTACTTTCTACCGCGGTACAACTAAGAAAACTGAAACAATTAAA
CTAACTAAAACAACTCAAGACCTCTCTTCTTCATCAGATTCATCAAATCAAAATCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

63.861

96.42

0.616

  htrA Streptococcus gordonii str. Challis substr. CH1

61.097

95.704

0.585

  htrA Streptococcus mitis NCTC 12261

59.259

96.659

0.573

  htrA Streptococcus pneumoniae TIGR4

59.649

95.227

0.568

  htrA Streptococcus pneumoniae D39

59.649

95.227

0.568

  htrA Streptococcus pneumoniae Rx1

59.649

95.227

0.568

  htrA Streptococcus pneumoniae R6

59.649

95.227

0.568


Multiple sequence alignment