Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GO995_RS08780 Genome accession   NZ_CP046624
Coordinates   1763684..1765657 (-) Length   657 a.a.
NCBI ID   WP_157629425.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1758684..1770657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO995_RS08760 (GO995_08760) amiF 1759200..1760129 (-) 930 WP_015695756.1 ATP-binding cassette domain-containing protein Regulator
  GO995_RS08765 (GO995_08765) amiE 1760122..1761189 (-) 1068 WP_157629423.1 ABC transporter ATP-binding protein Regulator
  GO995_RS08770 (GO995_08770) amiD 1761198..1762124 (-) 927 WP_015695758.1 oligopeptide ABC transporter permease OppC Regulator
  GO995_RS08775 (GO995_08775) amiC 1762124..1763623 (-) 1500 WP_157629424.1 ABC transporter permease Regulator
  GO995_RS08780 (GO995_08780) amiA 1763684..1765657 (-) 1974 WP_157629425.1 peptide ABC transporter substrate-binding protein Regulator
  GO995_RS08785 (GO995_08785) - 1765929..1767095 (-) 1167 WP_074564540.1 CynX/NimT family MFS transporter -
  GO995_RS08790 (GO995_08790) gltX 1767293..1768750 (-) 1458 WP_157629426.1 glutamate--tRNA ligase -
  GO995_RS08795 (GO995_08795) - 1768873..1769370 (-) 498 WP_157629427.1 LURP-one-related/scramblase family protein -
  GO995_RS08800 (GO995_08800) - 1769409..1770335 (-) 927 WP_157629428.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 72940.63 Da        Isoelectric Point: 4.5287

>NTDB_id=406197 GO995_RS08780 WP_157629425.1 1763684..1765657(-) (amiA) [Streptococcus ruminicola strain CNU_G3]
MNKRGKWILSAGVVLLSASVLAACGNGKTSSSATSTYNYVYNSEPVSLDYIKMNQTGTSNITANLIDGLMENDQYGDLIP
SLAKDWKVSADGLTYTYTIRDDAKWYTADGEEYADVKAEDFITGLKHAADIKSEALYIVQDSIKGLQDYIDGKTKDFSTV
GVKALDDHTIQYTLNAPESYWNSKLTYGIMCPVNADFLKSKGNDFGKQTDPESLLYNGPYLLKSITAKSSMEFEKNPNYW
DADNVHIDDVKLTYFDGSDQDSLFNNFDEGSYTSAALYPSSPSYKTAEKKYSDNIIYAQQDASTFMIYFNLNRTLHNLSD
KTDAQLSDSNKAMNNKDFRQAVTFAFDRGSWNAQTAGEEAKNKALRNSLVPPAFVQVDGKEFGDVVKSDLASYGDEWKDV
DLTDAQDGLYNPDKAKAEFAKAKSALESEGVSFPIQLDFPVAQTDNDSVQRAQSLKQSVESNLGKENVVINLKQVTEDEY
LSATYQAESPEQNDYDLGFSGWSPDYSDPSSYLDIFGTGKTAAMTYRLGISSDNDALIKSTGLDQYQSLLDEANALKDSD
QVDQRYETYAKAQAWLIDSALAIPTVTNGARPQVTRVKPFSGAWSYVGIKGGTYKYLKLQDKPVTAKEYEKARNKWLNNK
EKANEKAAKELAKHVEK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=406197 GO995_RS08780 WP_157629425.1 1763684..1765657(-) (amiA) [Streptococcus ruminicola strain CNU_G3]
ATGAATAAAAGAGGAAAATGGATTTTAAGTGCTGGTGTTGTGCTACTATCTGCATCTGTGCTTGCAGCTTGTGGTAATGG
TAAAACTTCAAGCTCTGCAACGTCAACTTACAACTATGTCTACAATTCTGAACCAGTTTCACTTGATTACATTAAGATGA
ATCAAACTGGTACAAGTAACATTACAGCAAATCTTATTGATGGTTTGATGGAAAATGACCAGTATGGCGACTTGATTCCG
TCACTTGCAAAAGATTGGAAAGTGTCAGCTGATGGTTTGACTTACACTTATACAATTCGTGATGACGCTAAATGGTATAC
TGCTGACGGTGAAGAATATGCAGATGTAAAAGCGGAAGACTTTATTACAGGTCTTAAGCATGCTGCGGATATTAAATCGG
AAGCTCTTTATATTGTGCAAGATTCAATTAAGGGTCTGCAAGATTATATTGATGGCAAGACAAAAGACTTCTCAACAGTC
GGTGTTAAAGCGCTTGATGACCACACTATCCAATATACGCTGAACGCCCCTGAATCATATTGGAATTCTAAATTAACTTA
CGGTATTATGTGTCCAGTAAATGCGGACTTCTTAAAATCAAAAGGTAATGATTTTGGTAAACAAACTGACCCAGAATCAT
TGCTTTATAACGGTCCATACTTACTAAAATCAATTACAGCCAAATCTTCAATGGAATTTGAAAAGAACCCGAATTATTGG
GATGCTGACAACGTCCATATCGATGATGTTAAGTTGACTTATTTTGACGGTTCAGACCAAGATTCACTCTTTAATAATTT
TGATGAAGGTTCATATACAAGTGCAGCCTTGTATCCATCATCTCCAAGCTATAAAACAGCAGAAAAGAAATATAGTGATA
ATATTATTTATGCTCAACAAGATGCTTCAACATTTATGATTTACTTCAATTTAAATCGTACTTTGCATAATTTATCAGAT
AAAACAGATGCGCAATTATCTGATTCTAATAAAGCTATGAACAATAAAGACTTCCGTCAAGCAGTGACATTTGCATTTGA
CCGTGGTTCATGGAATGCTCAAACTGCAGGTGAAGAAGCCAAAAATAAAGCATTGCGCAATAGCTTGGTACCACCAGCAT
TTGTTCAAGTTGATGGTAAAGAATTTGGTGATGTTGTTAAAAGTGACCTAGCATCATATGGTGATGAGTGGAAAGATGTC
GACCTTACAGATGCTCAAGATGGTTTGTATAACCCAGATAAAGCAAAAGCAGAATTTGCTAAAGCCAAATCAGCTCTTGA
ATCAGAAGGCGTCAGCTTCCCAATCCAACTTGATTTCCCAGTTGCTCAAACTGACAACGATTCTGTACAACGTGCACAAT
CATTAAAACAGTCAGTTGAATCTAATCTCGGTAAAGAAAATGTAGTGATTAACCTTAAACAAGTTACAGAAGATGAGTAC
TTATCAGCAACTTATCAAGCAGAAAGTCCTGAGCAAAATGACTATGACCTAGGCTTCTCAGGCTGGTCACCAGACTATTC
TGATCCATCTTCATATCTTGATATCTTTGGTACAGGTAAGACAGCGGCAATGACATATCGTCTTGGTATTTCTTCAGATA
ATGACGCCTTGATTAAATCTACTGGTCTTGATCAATATCAAAGCTTGCTTGATGAAGCAAATGCTCTTAAAGATTCAGAT
CAGGTTGATCAACGTTATGAAACATACGCAAAAGCTCAAGCATGGTTGATAGACAGTGCATTAGCTATTCCAACAGTTAC
TAATGGTGCTCGTCCACAAGTGACAAGAGTAAAACCATTTTCAGGAGCTTGGTCATATGTTGGTATTAAAGGTGGAACTT
ATAAATATCTAAAACTCCAAGATAAACCTGTAACAGCTAAAGAATATGAAAAAGCTCGTAATAAATGGCTTAATAATAAA
GAAAAAGCCAATGAAAAGGCTGCAAAAGAATTAGCTAAACACGTAGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.021

100

0.542
  amiA3 Streptococcus thermophilus LMD-9

52.727

100

0.53
  amiA3 Streptococcus thermophilus LMG 18311

52.576

100

0.528

Multiple sequence alignment