Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   GO995_RS08760 Genome accession   NZ_CP046624
Coordinates   1759200..1760129 (-) Length   309 a.a.
NCBI ID   WP_015695756.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1754200..1765129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO995_RS08740 (GO995_08740) - 1754742..1755557 (-) 816 WP_039696185.1 YidC/Oxa1 family membrane protein insertase -
  GO995_RS08745 (GO995_08745) rnpA 1755541..1755900 (-) 360 WP_006531772.1 ribonuclease P protein component -
  GO995_RS08750 (GO995_08750) argH 1756041..1757435 (-) 1395 WP_157629421.1 argininosuccinate lyase -
  GO995_RS08755 (GO995_08755) - 1757811..1759001 (-) 1191 WP_157629422.1 argininosuccinate synthase -
  GO995_RS08760 (GO995_08760) amiF 1759200..1760129 (-) 930 WP_015695756.1 ATP-binding cassette domain-containing protein Regulator
  GO995_RS08765 (GO995_08765) amiE 1760122..1761189 (-) 1068 WP_157629423.1 ABC transporter ATP-binding protein Regulator
  GO995_RS08770 (GO995_08770) amiD 1761198..1762124 (-) 927 WP_015695758.1 oligopeptide ABC transporter permease OppC Regulator
  GO995_RS08775 (GO995_08775) amiC 1762124..1763623 (-) 1500 WP_157629424.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35015.06 Da        Isoelectric Point: 6.6702

>NTDB_id=406193 GO995_RS08760 WP_015695756.1 1759200..1760129(-) (amiF) [Streptococcus ruminicola strain CNU_G3]
MTEKLVEVKNLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSNGDILYAGKRINGKKTSA
EHNDLISKIQMIFQDPAASLNERATVDYIISEGLYNFHHFEDDADRKRKVAEMMTEVGLLPEHLTRYPHEFSGGQRQRIG
IARALVMDPEFIIADEPISALDVSVRAQVLNLLKRIQREKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTRSLLSAVPIPDPILERQKELIVYDPSQHDYSTDKPEMVEIRPNHFVWANKVELSDYQKRLNK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=406193 GO995_RS08760 WP_015695756.1 1759200..1760129(-) (amiF) [Streptococcus ruminicola strain CNU_G3]
ATGACTGAAAAATTAGTTGAAGTAAAAAATTTGGAAATTTCCTTTGGTGAAGGAAAAAAGAAATTTGTTGCGGTTAAAAA
TGCAAATTTTTTCATCAATAAAGGTGAGACTTTCTCATTAGTTGGTGAATCAGGTTCGGGGAAAACAACCATCGGTCGTG
CTATCATCGGATTGAATGAGACAAGTAATGGCGACATTTTATATGCTGGTAAACGTATTAACGGTAAGAAAACATCTGCT
GAACATAATGATTTGATTTCCAAAATTCAAATGATTTTCCAAGATCCAGCAGCTAGTTTAAATGAGCGAGCAACCGTTGA
TTATATTATTTCGGAGGGCTTATATAATTTTCATCATTTTGAAGATGATGCTGATCGAAAACGTAAAGTAGCAGAGATGA
TGACTGAGGTAGGATTATTGCCAGAGCATTTGACACGTTATCCACATGAATTTTCAGGGGGACAACGTCAGCGTATTGGA
ATTGCGCGTGCTTTGGTCATGGATCCTGAATTTATCATTGCAGATGAACCAATCTCAGCTTTAGATGTCTCAGTGCGTGC
TCAAGTATTAAATCTTTTGAAACGCATCCAGAGGGAAAAAGGCTTAACTTATCTCTTTATCGCACATGATCTGTCTGTAG
TTCGTTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGTGTTATTGTTGAAGTAGCGGAGACAGAAGAGCTATTTAAT
AATCCAATCCATCCTTATACACGTTCATTACTTTCAGCGGTTCCAATTCCAGATCCTATTCTTGAACGCCAAAAAGAATT
AATTGTGTATGATCCAAGTCAACACGATTACTCAACAGATAAACCTGAGATGGTGGAAATTCGCCCAAATCATTTTGTCT
GGGCAAATAAAGTTGAATTATCTGACTACCAAAAACGACTAAATAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

80.259

100

0.803
  amiF Streptococcus thermophilus LMG 18311

79.935

100

0.799
  amiF Streptococcus salivarius strain HSISS4

79.612

100

0.796

Multiple sequence alignment