Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GO995_RS08775 Genome accession   NZ_CP046624
Coordinates   1762124..1763623 (-) Length   499 a.a.
NCBI ID   WP_157629424.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1757124..1768623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO995_RS08755 (GO995_08755) - 1757811..1759001 (-) 1191 WP_157629422.1 argininosuccinate synthase -
  GO995_RS08760 (GO995_08760) amiF 1759200..1760129 (-) 930 WP_015695756.1 ATP-binding cassette domain-containing protein Regulator
  GO995_RS08765 (GO995_08765) amiE 1760122..1761189 (-) 1068 WP_157629423.1 ABC transporter ATP-binding protein Regulator
  GO995_RS08770 (GO995_08770) amiD 1761198..1762124 (-) 927 WP_015695758.1 oligopeptide ABC transporter permease OppC Regulator
  GO995_RS08775 (GO995_08775) amiC 1762124..1763623 (-) 1500 WP_157629424.1 ABC transporter permease Regulator
  GO995_RS08780 (GO995_08780) amiA 1763684..1765657 (-) 1974 WP_157629425.1 peptide ABC transporter substrate-binding protein Regulator
  GO995_RS08785 (GO995_08785) - 1765929..1767095 (-) 1167 WP_074564540.1 CynX/NimT family MFS transporter -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55573.85 Da        Isoelectric Point: 9.8507

>NTDB_id=406196 GO995_RS08775 WP_157629424.1 1762124..1763623(-) (amiC) [Streptococcus ruminicola strain CNU_G3]
MKKYVFNRILRSLVSIFLVTTLSYAIVFSLVPRKLIFKQDPNYTKIAVTHDKKVDYENTVYERMGYIDYLNTKELVNGSK
KIDKSVTDKGTVADKQLYQNYLDSISGKWKLEKFDSGKYFATREIPIYERLWKFYSNLIVIDHPWKINDQENPKLERYVR
FENDPAVGPALVGSGTQHKYLIYFNSKFPFIHQNIITFNLGISYPSFANIPVLQVITQGQGKTLAQEVTFPTGVTKVSSV
DIYTRSYKSPSKADARDIANYGKGDAYTATQNNYTEPSMISNSLKAGIVGILIAYALGLPIGLLMARYKDGIFDRFSTAT
VTFMLAMPSIATIYVIRFIGANVFGLPDTFPLLGAGDIRSYVMPAIILGILSTPGIVVWFRRYLVDLQGSDFVRFARAKG
LSETEICQDHLFKHAMVPIVNGIPGAIVGTIAGATLTEKIFAFPGMGKMLIDAIASANNTMVIGLVFIFAVLAIFALLVG
DILMTVLDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=406196 GO995_RS08775 WP_157629424.1 1762124..1763623(-) (amiC) [Streptococcus ruminicola strain CNU_G3]
ATGAAAAAATATGTTTTTAATCGAATATTAAGATCCTTAGTTTCTATATTCTTGGTGACAACATTATCATATGCGATTGT
GTTTTCGCTTGTTCCACGAAAACTAATTTTCAAGCAAGACCCTAATTACACCAAAATCGCTGTCACACATGATAAAAAAG
TTGACTATGAGAACACTGTTTATGAGCGCATGGGTTATATCGACTACCTTAATACTAAAGAACTTGTAAATGGTAGCAAA
AAAATCGACAAATCGGTGACTGACAAGGGAACAGTAGCTGATAAGCAATTGTATCAAAACTATCTTGATTCTATTTCTGG
CAAATGGAAGTTAGAAAAATTTGATTCTGGAAAATATTTTGCAACACGTGAAATTCCAATTTATGAACGCCTTTGGAAAT
TTTATTCTAATTTGATTGTGATTGATCATCCGTGGAAAATTAATGATCAAGAAAATCCAAAATTAGAGCGCTATGTACGT
TTTGAAAATGATCCCGCCGTTGGACCAGCGCTTGTTGGATCAGGGACACAGCATAAATATCTCATTTATTTTAATAGCAA
GTTCCCATTTATTCATCAAAATATTATTACTTTCAATTTAGGTATTTCATATCCAAGCTTTGCTAATATTCCTGTATTAC
AGGTTATCACTCAGGGCCAAGGGAAAACTTTAGCACAAGAAGTGACATTCCCAACAGGAGTAACTAAAGTATCATCAGTT
GATATTTATACGCGTTCATATAAATCACCAAGTAAGGCTGATGCTCGTGATATTGCAAATTATGGTAAGGGTGATGCCTA
CACTGCCACTCAAAATAATTACACCGAACCTTCAATGATTTCAAATTCATTGAAAGCAGGTATTGTCGGAATTTTAATTG
CCTATGCTCTTGGTTTGCCAATAGGTCTTTTAATGGCACGTTATAAAGATGGTATTTTTGACCGCTTTTCAACAGCAACT
GTCACTTTCATGCTGGCTATGCCAAGTATTGCTACTATTTACGTGATTCGTTTTATTGGTGCTAATGTGTTTGGTCTACC
AGATACATTTCCATTATTAGGTGCTGGAGATATACGTTCTTACGTAATGCCTGCTATCATTTTGGGAATTTTGAGTACAC
CAGGTATTGTAGTTTGGTTCCGTCGCTATTTAGTGGATTTGCAAGGTAGTGATTTTGTTCGATTTGCGCGTGCAAAAGGT
TTGTCTGAAACAGAAATCTGTCAAGATCATTTGTTTAAACATGCTATGGTTCCAATTGTGAATGGCATTCCTGGAGCAAT
CGTGGGAACTATTGCTGGGGCAACTCTGACTGAGAAAATTTTTGCTTTTCCAGGTATGGGGAAAATGTTGATTGATGCTA
TTGCTTCTGCTAATAATACAATGGTTATCGGCTTAGTATTTATTTTTGCGGTCTTAGCAATTTTTGCACTTCTTGTAGGA
GATATTTTGATGACTGTTCTTGACCCACGTATAAAACTATCATCAAAAGGAGGTAAGTGA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60.2

100

0.603
  amiC Streptococcus thermophilus LMG 18311

59.6

100

0.597
  amiC Streptococcus thermophilus LMD-9

59.2

100

0.593

Multiple sequence alignment