Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GO995_RS08770 Genome accession   NZ_CP046624
Coordinates   1761198..1762124 (-) Length   308 a.a.
NCBI ID   WP_015695758.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1756198..1767124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO995_RS08755 (GO995_08755) - 1757811..1759001 (-) 1191 WP_157629422.1 argininosuccinate synthase -
  GO995_RS08760 (GO995_08760) amiF 1759200..1760129 (-) 930 WP_015695756.1 ATP-binding cassette domain-containing protein Regulator
  GO995_RS08765 (GO995_08765) amiE 1760122..1761189 (-) 1068 WP_157629423.1 ABC transporter ATP-binding protein Regulator
  GO995_RS08770 (GO995_08770) amiD 1761198..1762124 (-) 927 WP_015695758.1 oligopeptide ABC transporter permease OppC Regulator
  GO995_RS08775 (GO995_08775) amiC 1762124..1763623 (-) 1500 WP_157629424.1 ABC transporter permease Regulator
  GO995_RS08780 (GO995_08780) amiA 1763684..1765657 (-) 1974 WP_157629425.1 peptide ABC transporter substrate-binding protein Regulator
  GO995_RS08785 (GO995_08785) - 1765929..1767095 (-) 1167 WP_074564540.1 CynX/NimT family MFS transporter -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34751.68 Da        Isoelectric Point: 7.9086

>NTDB_id=406195 GO995_RS08770 WP_015695758.1 1761198..1762124(-) (amiD) [Streptococcus ruminicola strain CNU_G3]
MTNIDKSKFEFVELDSSASEVIDTPTYSYWKSVFRQFFSKKSTIAMLILLIAILLMSFIYPMFSNFDFNDVSDINDFSKR
YVWPNSQYWFGTDKNGQSLFDGVWYGARNSILISVIATIINMVIGLVVGLLWGISKAVDKIMIEIYNVISNLPFILIVMI
LTYSLGSGFWNLILAFCITGWVGIAYSIRVQVMRYRDLEYNLASRTLGTPTIKIATKNLLPQLVSVIVTMVSQMLPSYIS
YEAFLSAFGIGLPVTEPSLGRLISNYSSNLTTNAYLFWIPLATLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=406195 GO995_RS08770 WP_015695758.1 1761198..1762124(-) (amiD) [Streptococcus ruminicola strain CNU_G3]
ATGACTAATATAGACAAAAGTAAATTTGAATTTGTTGAGTTAGATAGTAGTGCCTCTGAAGTTATTGATACACCGACTTA
TTCATATTGGAAATCAGTTTTTAGACAATTCTTTTCTAAAAAGTCGACAATAGCAATGCTTATTTTGCTAATTGCTATTC
TTCTGATGAGTTTTATCTATCCAATGTTTTCAAATTTTGATTTCAATGATGTCAGTGATATTAACGATTTTTCAAAACGC
TATGTTTGGCCAAATAGTCAGTACTGGTTTGGTACGGATAAGAATGGTCAGTCGCTGTTTGATGGTGTTTGGTACGGCGC
TAGAAATTCTATATTGATTTCGGTTATTGCTACTATTATTAATATGGTTATTGGGCTTGTAGTAGGACTACTTTGGGGGA
TTTCTAAAGCAGTCGATAAAATCATGATTGAAATTTATAACGTTATTTCAAATCTTCCATTTATCTTAATCGTTATGATT
TTAACGTATTCTCTAGGTTCAGGATTTTGGAATTTGATTTTGGCATTTTGTATTACAGGTTGGGTTGGTATTGCTTACTC
TATTCGTGTTCAAGTGATGCGTTATCGTGATTTGGAATACAATCTTGCTAGTCGTACTTTAGGAACACCAACTATAAAAA
TTGCGACCAAAAACCTTTTACCCCAATTAGTCTCTGTTATTGTTACTATGGTTTCTCAGATGTTGCCATCATACATTTCA
TATGAAGCCTTCCTATCTGCTTTTGGTATTGGACTTCCAGTCACTGAACCAAGTCTAGGCCGTTTGATTTCAAATTATTC
TTCTAATTTGACAACAAATGCTTATCTTTTCTGGATTCCATTAGCAACGCTCATTTTAGTATCGCTTCCTCTCTATATTG
TTGGGCAAAATCTTGCTGATGCTAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

76.299

100

0.763
  amiD Streptococcus thermophilus LMG 18311

74.675

100

0.747
  amiD Streptococcus thermophilus LMD-9

74.675

100

0.747

Multiple sequence alignment