Detailed information NTG0405998

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: GOY17_RS14765
• Genome accession: NZ_CP046603
• Coordinates: 3229063..3230235 (-)
• Length: 390 a.a.
• NCBI ID: WP_115842567.1
• Uniprot ID: -
• Organism: Lysobacter soli strain XL170
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3224063..3235235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOY17_RS14760 (GOY17_14760)	-	3226707..3228980 (+)	2274	WP_198173703.1	ATP-binding protein	-
GOY17_RS14765 (GOY17_14765)	pilU	3229063..3230235 (-)	1173	WP_115842567.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
GOY17_RS14770 (GOY17_14770)	pilT	3230365..3231402 (-)	1038	WP_115842568.1	type IV pilus twitching motility protein PilT	Machinery gene
GOY17_RS14775 (GOY17_14775)	-	3231513..3232196 (+)	684	WP_232338443.1	YggS family pyridoxal phosphate-dependent enzyme	-
GOY17_RS14780 (GOY17_14780)	proC	3232233..3233069 (+)	837	WP_157030967.1	pyrroline-5-carboxylate reductase	-
GOY17_RS14785 (GOY17_14785)	-	3233082..3233594 (+)	513	WP_157030968.1	DUF4426 domain-containing protein	-
GOY17_RS14790 (GOY17_14790)	-	3233821..3234621 (-)	801	WP_157030969.1	cobalamin-binding protein	-
GOY17_RS14795 (GOY17_14795)	aac(6')	3234618..3235076 (-)	459	WP_157030970.1	aminoglycoside 6'-N-acetyltransferase	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43054.61 Da
• Isoelectric Point: 7.0157

>NTDB_id=405998 GOY17_RS14765 WP_115842567.1 3229063..3230235(-) (pilU) [Lysobacter soli strain XL170]
MSTNTTGTTPATNASGAIDFTSFLKLMAHQKASDLFITAGMPPSMKVHGKIAPITPNALTPQQSRDMVLNVMNPQQREEF
EKTHECNFAIGVAGVGRFRVSCFYQRNQVGMVLRRIETKIPTVEELNLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAM
IGYRNLNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHL
VLCTLHANNANQAMDRIINFFPEDRRQQLLMDLSLNLKGVVAQQLIPTPDGKGRRVAMEILLGTPLVQDYIRDGEIHKLK
EVMKESVQLGMKTFDQALFELYQAGEISYEDALRYADSQNEVRLRIKLAQGGDAKTLAAGLDGVELAQVR

Nucleotide

• Length: 1173 bp

>NTDB_id=405998 GOY17_RS14765 WP_115842567.1 3229063..3230235(-) (pilU) [Lysobacter soli strain XL170]
ATGAGCACCAACACCACCGGCACCACGCCCGCCACGAACGCCTCCGGCGCCATCGACTTCACCTCGTTCCTGAAGCTGAT
GGCGCACCAGAAGGCGTCGGACCTGTTCATCACCGCCGGCATGCCGCCGTCGATGAAGGTGCACGGCAAGATCGCGCCGA
TCACGCCCAACGCCCTGACGCCGCAGCAGTCGCGCGACATGGTGCTGAACGTGATGAATCCGCAGCAGCGCGAGGAATTC
GAGAAGACGCACGAGTGCAACTTCGCCATCGGCGTCGCCGGCGTCGGCCGCTTCCGCGTGAGCTGTTTCTACCAGCGCAA
CCAGGTCGGCATGGTGCTTCGTCGCATCGAGACGAAGATCCCGACGGTGGAAGAACTGAACCTGCCGCCGGTGATCAAGA
CGCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCGCGACGGGCACGGGTAAGTCCACCTCGCTCGCGGCGATG
ATCGGCTACCGCAACCTCAACTCGACCGGCCACATCATCACCATCGAGGACCCGATCGAATTCGTGCACAAGCACGAGGG
CTGCATCATCACGCAGCGCGAAGTGGGCATCGACACCGACAGCTGGGAAGCGGCGCTGAAGAACACGCTGCGCCAGGCGC
CGGACGTGATCATGATCGGCGAGGTGCGCACGCGCGAAGGCATGGACCACGCCATCGCCTTCGCCGAAACCGGCCACCTG
GTGCTGTGCACGCTGCACGCCAACAACGCCAACCAGGCGATGGACCGCATCATCAACTTCTTCCCGGAAGACCGCCGCCA
GCAGCTGCTGATGGACTTGTCGCTGAACCTGAAGGGCGTGGTCGCGCAGCAGCTGATCCCGACGCCGGACGGCAAGGGCC
GCCGCGTGGCGATGGAAATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGATGGCGAGATCCACAAGCTCAAG
GAAGTGATGAAGGAATCCGTGCAGCTGGGCATGAAGACCTTCGACCAGGCGCTGTTCGAGCTGTACCAGGCCGGCGAGAT
TTCCTACGAGGACGCGCTGCGCTACGCCGACTCGCAGAACGAAGTGCGCCTGCGCATCAAGCTCGCGCAGGGCGGCGACG
CGAAGACGCTCGCGGCCGGGCTCGACGGCGTGGAGCTGGCACAGGTCCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (133-286)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	68.022	94.615	0.644
pilU	Acinetobacter baylyi ADP1	64.146	91.538	0.587
pilU	Vibrio cholerae strain A1552	53.933	91.282	0.492
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.019	95.641	0.392