Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GM698_RS08115 Genome accession   NZ_CP046532
Coordinates   1700597..1701118 (-) Length   173 a.a.
NCBI ID   WP_176808828.1    Uniprot ID   -
Organism   Mannheimia sp. ZY171111     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1695597..1706118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM698_RS08100 (GM698_08055) gntR 1697245..1698240 (+) 996 WP_176810250.1 gluconate operon transcriptional repressor GntR -
  GM698_RS08105 (GM698_08060) - 1698289..1698804 (-) 516 WP_159629158.1 gluconokinase -
  GM698_RS08110 (GM698_08065) - 1698992..1700341 (+) 1350 WP_176812740.1 GntP family permease -
  GM698_RS08115 (GM698_08070) ssb 1700597..1701118 (-) 522 WP_176808828.1 single-stranded DNA-binding protein Machinery gene
  GM698_RS08120 (GM698_08075) uvrA 1701275..1704103 (+) 2829 WP_209289241.1 excinuclease ABC subunit UvrA -
  GM698_RS08125 (GM698_08080) - 1704311..1705243 (+) 933 WP_209289242.1 ABC transporter permease -
  GM698_RS08130 (GM698_08085) - 1705245..1706042 (+) 798 WP_176808825.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19340.10 Da        Isoelectric Point: 5.2533

>NTDB_id=405188 GM698_RS08115 WP_176808828.1 1700597..1701118(-) (ssb) [Mannheimia sp. ZY171111]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLGSRQGNDMSNQPQSGWGNSAPAGNSYNQGNSNYSYSQTSNSAQPQSKPAPQA
EPAMNNFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=405188 GM698_RS08115 WP_176808828.1 1700597..1701118(-) (ssb) [Mannheimia sp. ZY171111]
ATGGCTGGTATCAATAAAGTAATTATCGTAGGTAATTTAGGTAACGACCCAGAAATGCGTACAATGCCAAATGGCGAAGC
GGTAGCAAATATTAGTGTAGCGACATCTGAAAGCTGGACGGATAAAAATACAGGCGAACGTCGAGAGGTTACTGAATGGC
ATCGTATTGTATTTTATCGTCGCCAAGCAGAAGTATGTGGGCAATATCTACGTAAAGGTTCACAAGTTTATGTGGAAGGT
CGTTTAAGAACCCGTAAATGGCAAGACCAAAACGGACAAGATCGTTACACCACTGAAATTCAAGGTGATGTATTACAAAT
GCTCGGTAGCCGCCAAGGTAATGATATGAGCAACCAACCACAAAGCGGTTGGGGTAATTCAGCACCTGCAGGAAATAGTT
ATAATCAAGGTAATAGCAATTATAGCTATAGCCAAACTTCAAACTCAGCACAACCACAATCTAAGCCTGCTCCACAAGCT
GAACCTGCAATGAACAATTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

72.928

100

0.763
  ssb Vibrio cholerae strain A1552

53.977

100

0.549
  ssb Neisseria meningitidis MC58

46.857

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.857

100

0.474
  ssb Latilactobacillus sakei subsp. sakei 23K

35.165

100

0.37

Multiple sequence alignment