Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GM698_RS00790 Genome accession   NZ_CP046532
Coordinates   167774..168967 (-) Length   397 a.a.
NCBI ID   WP_176812460.1    Uniprot ID   -
Organism   Mannheimia sp. ZY171111     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 162774..173967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM698_RS00765 (GM698_00765) lptE 164726..165214 (+) 489 WP_176808298.1 LPS assembly lipoprotein LptE -
  GM698_RS00770 (GM698_00770) holA 165255..166277 (+) 1023 WP_176808297.1 DNA polymerase III subunit delta -
  GM698_RS00775 (GM698_00775) yacG 166278..166463 (-) 186 WP_159629615.1 DNA gyrase inhibitor YacG -
  GM698_RS00780 (GM698_00780) coaE 166445..167083 (-) 639 WP_209289483.1 dephospho-CoA kinase -
  GM698_RS00785 (GM698_00785) - 167115..167771 (-) 657 WP_209289484.1 prepilin peptidase -
  GM698_RS00790 (GM698_00790) pilC 167774..168967 (-) 1194 WP_176812460.1 type II secretion system F family protein Machinery gene
  GM698_RS00795 (GM698_00795) pilB 168951..170351 (-) 1401 WP_209289485.1 GspE/PulE family protein Machinery gene
  GM698_RS00800 (GM698_00800) pilA 170373..170816 (-) 444 WP_209289486.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  GM698_RS00805 (GM698_00805) radA 170997..172376 (+) 1380 WP_176808292.1 DNA repair protein RadA Machinery gene
  GM698_RS00810 (GM698_00810) - 172415..172648 (-) 234 WP_159629593.1 YgjV family protein -
  GM698_RS00815 (GM698_00815) - 172776..173270 (-) 495 WP_159629590.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 45530.13 Da        Isoelectric Point: 9.4575

>NTDB_id=405167 GM698_RS00790 WP_176812460.1 167774..168967(-) (pilC) [Mannheimia sp. ZY171111]
MAKIYEYHWKAVDRFQQKRKGSRLSSSREELESMLLMKGYEQIRINRNFVLSQNPKREQISQFISQLALLVNSAISLKQA
LSMILQNCRNIKMYQWLSELILLIENGYSFSQSLEKQDKFIANQELQLIKMGEQSGKLGIILTNLAKSRAKSDKLAKKVK
KILFYPAIVLFISLSLSLGLLIFIVPQFAELYGTKEKALPLITEILFSLSQCLIEQKHLLLSLLLAVVFFLFFAKRENGF
VRLKMALLSKLPVFRQIIQQARIVFFSQNMALMLNAHIPLDLVLKSFLSEKSDDPILQKEVEFMLNLLQQGYPFSQGINP
NVFGLDMPQMIEIGEQSGNVANICEHISEMYQQKLDYQIDMLSQLLEPMLMLLMGIIVGTIIVGLYLPIFDMGSLVE

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=405167 GM698_RS00790 WP_176812460.1 167774..168967(-) (pilC) [Mannheimia sp. ZY171111]
ATGGCGAAAATCTATGAATACCATTGGAAAGCGGTTGATCGTTTTCAACAAAAACGTAAAGGCAGCCGATTATCTAGTAG
CCGAGAAGAGCTTGAAAGTATGTTGTTAATGAAAGGTTATGAGCAGATTCGCATTAATCGAAACTTCGTTTTATCTCAAA
ATCCGAAAAGAGAGCAGATCAGCCAATTTATTTCCCAGCTTGCGTTATTAGTGAATTCCGCTATATCGTTAAAACAGGCT
CTTTCGATGATTTTACAAAACTGCCGAAATATTAAAATGTATCAATGGCTAAGCGAGCTCATTTTGCTGATTGAAAATGG
TTATTCTTTTTCACAATCATTAGAGAAACAAGATAAATTTATTGCTAATCAAGAACTTCAACTGATTAAAATGGGCGAGC
AAAGCGGAAAACTAGGTATCATCTTAACGAATTTGGCGAAAAGCCGAGCTAAGTCTGATAAGTTAGCTAAAAAAGTGAAG
AAAATCTTGTTTTATCCTGCGATTGTATTGTTTATTTCCCTGTCTCTTTCTCTCGGATTGTTGATCTTCATTGTGCCCCA
GTTTGCAGAACTTTACGGCACAAAAGAGAAAGCCTTACCACTGATTACGGAAATACTATTTTCTCTTTCCCAGTGTTTGA
TTGAACAGAAGCATCTTCTACTTAGTTTATTACTAGCGGTCGTTTTTTTCCTCTTTTTTGCAAAAAGAGAGAACGGGTTT
GTGAGGTTAAAAATGGCGTTATTGTCTAAACTCCCTGTATTTCGACAAATCATACAGCAAGCCCGTATTGTCTTTTTTAG
CCAAAATATGGCTTTAATGTTGAATGCTCATATTCCGTTAGATTTGGTATTAAAATCCTTTTTATCTGAAAAAAGCGATG
ATCCTATATTACAAAAAGAGGTTGAATTTATGCTAAATCTCTTGCAACAAGGCTACCCATTTTCGCAAGGCATTAATCCA
AATGTGTTTGGCTTAGATATGCCACAAATGATCGAAATCGGCGAGCAAAGCGGCAACGTTGCCAACATATGCGAACATAT
TAGCGAGATGTACCAACAAAAACTGGATTATCAAATTGATATGCTCTCTCAGTTATTAGAGCCAATGTTGATGTTACTGA
TGGGAATAATTGTGGGGACTATTATTGTCGGTTTATATCTACCCATTTTTGATATGGGAAGTTTAGTGGAGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(266-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

56

100

0.564
  pilC Haemophilus influenzae Rd KW20

41.147

100

0.416
  pilC Haemophilus influenzae 86-028NP

40.15

100

0.406

Multiple sequence alignment