Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | GM695_RS03605 | Genome accession | NZ_CP046531 |
| Coordinates | 715352..715678 (-) | Length | 108 a.a. |
| NCBI ID | WP_159629038.1 | Uniprot ID | - |
| Organism | Mannheimia pernigra strain ZY170218 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 710352..720678
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GM695_RS03590 (GM695_03585) | gshAB | 710949..713225 (-) | 2277 | WP_159629035.1 | bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB | - |
| GM695_RS03595 (GM695_03590) | - | 713432..714235 (+) | 804 | WP_159629036.1 | tyrosine-type recombinase/integrase | - |
| GM695_RS03600 (GM695_03595) | asd | 714295..715191 (-) | 897 | WP_159629037.1 | archaetidylserine decarboxylase | - |
| GM695_RS03605 (GM695_03600) | comEA/comE1 | 715352..715678 (-) | 327 | WP_159629038.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| GM695_RS03610 (GM695_03605) | - | 715958..717142 (+) | 1185 | WP_159629039.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| GM695_RS03615 (GM695_03610) | - | 717204..717623 (+) | 420 | WP_159629040.1 | MliC family protein | - |
| GM695_RS03620 (GM695_03615) | waaF | 717701..718738 (+) | 1038 | WP_159629041.1 | lipopolysaccharide heptosyltransferase II | - |
| GM695_RS03625 (GM695_03620) | rfaC | 718801..719760 (+) | 960 | WP_159629042.1 | lipopolysaccharide heptosyltransferase RfaC | - |
| GM695_RS03630 (GM695_03625) | rpsL | 719880..720254 (+) | 375 | WP_005708967.1 | 30S ribosomal protein S12 | - |
Sequence
Protein
Download Length: 108 a.a. Molecular weight: 11757.50 Da Isoelectric Point: 10.0540
>NTDB_id=405148 GM695_RS03605 WP_159629038.1 715352..715678(-) (comEA/comE1) [Mannheimia pernigra strain ZY170218]
MNKMKTLALSLLIGLNTLAFAQKTPQIEQNNTLKAQQSMQKNLSAVNINTASAAELQDKLVGIGEKKAQAIVDYRTQNGN
FKSIEQLTEVSGIGQATLEKNRGNIILE
MNKMKTLALSLLIGLNTLAFAQKTPQIEQNNTLKAQQSMQKNLSAVNINTASAAELQDKLVGIGEKKAQAIVDYRTQNGN
FKSIEQLTEVSGIGQATLEKNRGNIILE
Nucleotide
Download Length: 327 bp
>NTDB_id=405148 GM695_RS03605 WP_159629038.1 715352..715678(-) (comEA/comE1) [Mannheimia pernigra strain ZY170218]
ATGAACAAGATGAAAACTCTAGCACTCAGTCTATTAATCGGCTTAAATACCCTGGCTTTCGCTCAAAAAACACCACAAAT
TGAGCAAAATAATACGCTAAAAGCACAACAAAGTATGCAAAAAAACCTTAGTGCGGTAAATATCAATACAGCGAGTGCAG
CCGAACTGCAAGATAAGCTCGTAGGTATAGGTGAGAAAAAAGCCCAAGCCATTGTGGATTATCGTACCCAAAACGGCAAT
TTCAAAAGTATTGAACAACTTACTGAAGTTTCTGGAATCGGGCAAGCTACCTTAGAGAAAAACCGAGGAAATATCATTTT
AGAATAA
ATGAACAAGATGAAAACTCTAGCACTCAGTCTATTAATCGGCTTAAATACCCTGGCTTTCGCTCAAAAAACACCACAAAT
TGAGCAAAATAATACGCTAAAAGCACAACAAAGTATGCAAAAAAACCTTAGTGCGGTAAATATCAATACAGCGAGTGCAG
CCGAACTGCAAGATAAGCTCGTAGGTATAGGTGAGAAAAAAGCCCAAGCCATTGTGGATTATCGTACCCAAAACGGCAAT
TTCAAAAGTATTGAACAACTTACTGAAGTTTCTGGAATCGGGCAAGCTACCTTAGAGAAAAACCGAGGAAATATCATTTT
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.097 |
100 |
0.556 |
| comEA | Vibrio cholerae C6706 |
49.057 |
98.148 |
0.481 |
| comEA | Vibrio cholerae strain A1552 |
49.057 |
98.148 |
0.481 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
64.516 |
57.407 |
0.37 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.903 |
57.407 |
0.361 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.792 |
98.148 |
0.361 |
| comEA | Legionella pneumophila str. Paris |
36.792 |
98.148 |
0.361 |