Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   GOM46_RS00175 Genome accession   NZ_CP046525
Coordinates   38319..38981 (+) Length   220 a.a.
NCBI ID   WP_006150533.1    Uniprot ID   F5W079
Organism   Streptococcus infantis strain SO     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 33319..43981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS00150 (GOM46_00150) plsX 33976..34968 (+) 993 WP_006150504.1 phosphate acyltransferase PlsX -
  GOM46_RS00155 (GOM46_00155) - 34970..35206 (+) 237 WP_235083605.1 acyl carrier protein -
  GOM46_RS00160 (GOM46_00160) cysK 35260..36186 (-) 927 WP_006150537.1 cysteine synthase A -
  GOM46_RS00165 (GOM46_00165) - 36333..36968 (-) 636 WP_235083606.1 YigZ family protein -
  GOM46_RS00170 (GOM46_00170) comFA/cflA 37024..38322 (+) 1299 WP_235083607.1 DEAD/DEAH box helicase Machinery gene
  GOM46_RS00175 (GOM46_00175) comFC/cflB 38319..38981 (+) 663 WP_006150533.1 ComF family protein Machinery gene
  GOM46_RS00180 (GOM46_00180) hpf 39061..39609 (+) 549 WP_006150510.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  GOM46_RS00185 (GOM46_00185) - 39826..41034 (+) 1209 WP_235083608.1 acyl-CoA dehydrogenase family protein -
  GOM46_RS00190 (GOM46_00190) - 41138..41986 (+) 849 WP_006150532.1 3-hydroxybutyryl-CoA dehydrogenase -
  GOM46_RS00195 (GOM46_00195) - 42005..43183 (+) 1179 WP_235083609.1 acetyl-CoA C-acetyltransferase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24938.87 Da        Isoelectric Point: 8.5529

>NTDB_id=405030 GOM46_RS00175 WP_006150533.1 38319..38981(+) (comFC/cflB) [Streptococcus infantis strain SO]
MTCLLCGQHLGSNLTFRNLLFLKKEAGSLCFTCSSSFEKIGEEHCPTCYKAGVSTSCQDCQLWCKEGIDVSHEAIFTYNQ
AMKDYFSRYKFDGDYILRKIFASILKDKLRKYKEFQILLIPLSPERFSKRGFNQVEGLIETTGLSYLDLLGKSEVKASSS
KNRSERLATELPFFIKNGVTIPKKILLIDDIYTTGATVNRVKSMLENAGAEEVRTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=405030 GOM46_RS00175 WP_006150533.1 38319..38981(+) (comFC/cflB) [Streptococcus infantis strain SO]
ATGACTTGCTTACTATGTGGACAACACTTGGGAAGTAATTTAACCTTTAGAAATCTTCTTTTTTTAAAAAAGGAGGCAGG
TTCGCTCTGTTTTACGTGCTCCTCAAGTTTCGAAAAAATAGGAGAAGAACATTGTCCAACCTGCTATAAAGCAGGAGTGT
CAACCTCGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGGATTGATGTCAGTCATGAAGCGATTTTTACTTATAATCAA
GCAATGAAGGATTACTTTAGCCGCTACAAGTTTGATGGAGATTATATTCTTAGAAAGATTTTTGCTTCAATTTTAAAAGA
TAAACTGCGAAAGTATAAAGAGTTTCAAATCCTTCTCATTCCCTTGAGTCCAGAGAGATTCTCTAAAAGGGGATTTAATC
AGGTTGAGGGCTTAATAGAAACTACAGGTTTATCCTATCTGGATTTATTAGGAAAAAGTGAAGTGAAAGCAAGCTCTTCA
AAAAATCGTTCAGAACGTTTAGCCACAGAACTCCCATTTTTTATTAAAAACGGCGTTACGATCCCAAAGAAAATTTTATT
AATTGATGATATTTATACGACAGGTGCGACTGTTAATCGTGTCAAGAGTATGCTAGAGAATGCAGGAGCAGAAGAGGTTA
GAACATTTTCCCTCGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(182-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5W079

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae D39

70.455

100

0.705
  comFC/cflB Streptococcus pneumoniae Rx1

70.455

100

0.705
  comFC/cflB Streptococcus pneumoniae TIGR4

70.455

100

0.705
  comFC/cflB Streptococcus pneumoniae R6

70.455

100

0.705
  comFC/cflB Streptococcus mitis NCTC 12261

70

100

0.7
  comFC/cflB Streptococcus mitis SK321

69.091

100

0.691
  comFC Bacillus subtilis subsp. subtilis str. 168

34.934

100

0.364

Multiple sequence alignment