Detailed information NTG0404924

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HWQ50_RS09430
• Genome accession: NZ_CP058331
• Coordinates: 2023953..2024957 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain ACR22
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2018953..2029957

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWQ50_RS09400 (HWQ50_09385)	fghA	2019045..2019896 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
HWQ50_RS09405 (HWQ50_09390)	ispF	2019967..2020440 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HWQ50_RS09410 (HWQ50_09395)	truD	2020437..2021504 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
HWQ50_RS09415 (HWQ50_09400)	surE	2021492..2022241 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HWQ50_RS09420 (HWQ50_09405)	-	2022274..2022909 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HWQ50_RS09425 (HWQ50_09410)	-	2022955..2023848 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
HWQ50_RS09430 (HWQ50_09415)	rpoS	2023953..2024957 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HWQ50_RS09435 (HWQ50_09420)	fdxA	2025384..2025707 (-)	324	WP_003119354.1	ferredoxin FdxA	-
HWQ50_RS09440 (HWQ50_09425)	mutS	2025774..2028341 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
HWQ50_RS09445 (HWQ50_09430)	-	2028467..2029474 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=404924 HWQ50_RS09430 WP_003113871.1 2023953..2024957(+) (rpoS) [Pseudomonas aeruginosa strain ACR22]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=404924 HWQ50_RS09430 WP_003113871.1 2023953..2024957(+) (rpoS) [Pseudomonas aeruginosa strain ACR22]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653