Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   GE024_RS02805 Genome accession   NZ_CP046521
Coordinates   528548..529258 (+) Length   236 a.a.
NCBI ID   WP_003049952.1    Uniprot ID   A0A9X9SIG1
Organism   Streptococcus canis strain HL_100     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 523548..534258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS02780 (GE024_02790) dhaK 523826..524815 (+) 990 WP_093998387.1 dihydroxyacetone kinase subunit DhaK -
  GE024_RS02785 (GE024_02795) dhaL 524826..525401 (+) 576 WP_093998386.1 dihydroxyacetone kinase subunit DhaL -
  GE024_RS02790 (GE024_02800) dhaM 525401..525775 (+) 375 WP_003047188.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  GE024_RS02795 (GE024_02805) - 525789..526499 (+) 711 WP_093998385.1 MIP/aquaporin family protein -
  GE024_RS02800 (GE024_02810) - 527373..528368 (+) 996 WP_138114078.1 DUF3114 domain-containing protein -
  GE024_RS02805 (GE024_02815) vicR 528548..529258 (+) 711 WP_003049952.1 response regulator YycF Regulator
  GE024_RS02810 (GE024_02820) vicK 529251..530603 (+) 1353 WP_093998382.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GE024_RS02815 (GE024_02825) vicX 530607..531416 (+) 810 WP_003047202.1 MBL fold metallo-hydrolase Regulator
  GE024_RS02820 (GE024_02830) rnc 531518..532210 (+) 693 WP_093998381.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27029.90 Da        Isoelectric Point: 4.9981

>NTDB_id=404850 GE024_RS02805 WP_003049952.1 528548..529258(+) (vicR) [Streptococcus canis strain HL_100]
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFEDEKPDLIILDLMLPELDGLEVAKEIRKTSHVPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVE
LTHREFELLHHLANHMGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=404850 GE024_RS02805 WP_003049952.1 528548..529258(+) (vicR) [Streptococcus canis strain HL_100]
ATGAAAAAAATACTTATTGTGGATGATGAAAAACCAATTTCTGACATTATTAAGTTTAACTTGACAAAAGAAGGTTATGA
CATTGTGACCGCTTTTGATGGCCGCGAAGCTGTTACCGTGTTTGAAGACGAAAAACCGGATTTAATTATTCTTGATTTGA
TGTTACCGGAATTGGACGGTCTTGAAGTGGCCAAAGAAATCCGTAAAACCAGTCATGTGCCGATTATTATGCTGTCGGCT
AAGGATAGTGAGTTTGACAAGGTCATTGGTCTTGAAATTGGAGCAGATGATTATGTTACCAAACCCTTTTCAAATCGTGA
ACTATTAGCGCGTGTCAAGGCTCATTTACGTCGAACAGAAACGATCGAAACAGCCGTAGCAGAGGAAAATGCTTCTTCAG
GTTCACAAGAGTTAACCATTGGTAATTTACAAATTTTACCAGATGCTTTTGTGGCTAAAAAACATGGCAAAGAAGTGGAA
TTAACCCATCGTGAATTTGAATTATTACACCACCTGGCCAATCATATGGGTCAAGTGATGACACGAGAGCACTTGCTTGA
AACGGTTTGGGGCTATGATTACTTTGGCGATGTCCGTACTGTTGATGTGACTGTTCGCCGCCTACGTGAAAAAATTGAAG
ACACACCAAGCCGTCCCGAATATATTTTGACGAGACGTGGTGTTGGGTATTACATGAAATCTTATGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.254

100

0.903
  micA Streptococcus pneumoniae Cp1015

79.487

99.153

0.788
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.828

98.305

0.441
  covR Streptococcus salivarius strain HSISS4

44.397

98.305

0.436
  scnR Streptococcus mutans UA159

37.712

100

0.377

Multiple sequence alignment