Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GE024_RS01875 Genome accession   NZ_CP046521
Coordinates   352004..353506 (+) Length   500 a.a.
NCBI ID   WP_003046676.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 347004..358506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS01860 (GE024_01855) - 347034..348215 (-) 1182 WP_171004465.1 D-alanyl-D-alanine carboxypeptidase family protein -
  GE024_RS01865 (GE024_01860) pbp3 348391..349629 (-) 1239 WP_093999417.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  GE024_RS01870 (GE024_01865) amiA 349959..351938 (+) 1980 WP_093999416.1 peptide ABC transporter substrate-binding protein Regulator
  GE024_RS01875 (GE024_01870) amiC 352004..353506 (+) 1503 WP_003046676.1 ABC transporter permease Regulator
  GE024_RS01880 (GE024_01875) amiD 353506..354432 (+) 927 WP_093999415.1 oligopeptide ABC transporter permease OppC Regulator
  GE024_RS01885 (GE024_01880) amiE 354441..355511 (+) 1071 WP_093999414.1 ABC transporter ATP-binding protein Regulator
  GE024_RS01890 (GE024_01885) amiF 355504..356427 (+) 924 WP_156667672.1 ABC transporter ATP-binding protein Regulator
  GE024_RS01895 (GE024_01890) - 356649..357600 (-) 952 Protein_320 IS30 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56124.32 Da        Isoelectric Point: 10.1038

>NTDB_id=404841 GE024_RS01875 WP_003046676.1 352004..353506(+) (amiC) [Streptococcus canis strain HL_100]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKADYENLTFQRMGYINYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPVSKKFYATRHIPIYERVWNFFSNLVVIDHPWKIQDEDNPNLARYI
RLENDKSIGWALVGSGTQHKYLVYANGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGSMVGLPDSFPMLGASNPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGIPASIILTIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIISLLLG
DIAMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=404841 GE024_RS01875 WP_003046676.1 352004..353506(+) (amiC) [Streptococcus canis strain HL_100]
ATGAAAAAATACATCTTAAACCGTATCTTACGATCGTTAGTGTCGGTAGTTTTGGTAACGGCCTTAACATACACCATCGT
ATATACTCTAGTCCCTGTCGGTCTTATCTTTAAACAAGATCCTAACTACAATAAGATGACGACGACGCCAGACAAAAAGG
CTGATTACGAAAACTTAACCTTCCAACGTATGGGGTATATTAATTACTTTTCAAGCAAAGAATTGAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACAACAGAAGCCACTAGTGCTAACAAGGCTATTTATGAGAAATATATTGATTCGCTTGGCAA
TGGTTGGCAGTTAAAACGCTTCCCTGTCAGCAAAAAATTCTATGCTACTCGTCATATTCCTATTTACGAACGTGTTTGGA
ACTTCTTCTCAAACCTAGTTGTTATTGACCACCCTTGGAAGATCCAAGACGAGGACAATCCTAATTTAGCCAGATATATT
CGTCTTGAAAATGATAAATCGATTGGTTGGGCTTTAGTGGGGTCAGGGACACAACACAAATACCTTGTCTATGCTAACGG
TAAGTTTCCTTATCTTCACCAAAACTTCGTTACCCTAAACTTAGGAACATCTTACCCAACATACAGTAACATTCCAGTTC
TTCAAGTCATTTCACAAGGACAAGGTCGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTAACTAAGAAATCGTCA
GTGGATATTTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATTACCAAGGTAAATTATGGTAAGGGAGATTC
CTACACTAAAACTATTAATAATTATGTGGATCCTTCAATGATTCATAATTCATTTGTTATTGGATTCTTTGGCGTTATGT
TTTCCTATATTGTTGGTTTACCACTTGGTTTATTTATGGCTCGCTTTAAAAATACCTACTTTGACCGTTTTTCAACAGCA
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTGATCTATGTTGTTCGCTTCCTAGGAAGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTGGGAGCATCTAACCCTAAATCTTATATTTTACCAGCTCTTATTTTAGGAATTTTAAATATTC
CAACTACAGTTATCTGGTTCCGTCGCTACCTTGTTGACCTTCAGGCCAGTGACTGGGTGCGTTTTGCGCGCTCAAAAGGG
TTGTCAGAATCTGAAATTTACAGAGGGCATCTCTTTAAAAATGCTATGGTCCCAATTGTGTCAGGGATTCCGGCAAGTAT
TATTCTTACCATCGGTGGAGCAACCTTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTGATTGATTCTA
TTAAATCAGCCAACAACTCAATGATTGTTGGATTAACCTTTATCTTTACCGTCTTGTCAATTATCTCACTCTTACTAGGA
GATATTGCTATGACACTTGTCGATCCACGTATTAAATTATCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60.2

100

0.602
  amiC Streptococcus thermophilus LMD-9

59.8

100

0.598
  amiC Streptococcus thermophilus LMG 18311

59.8

100

0.598

Multiple sequence alignment