Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GE024_RS01870 Genome accession   NZ_CP046521
Coordinates   349959..351938 (+) Length   659 a.a.
NCBI ID   WP_093999416.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 344959..356938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS01850 (GE024_01845) sufB 345180..346598 (+) 1419 WP_003046659.1 Fe-S cluster assembly protein SufB -
  GE024_RS01860 (GE024_01855) - 347034..348215 (-) 1182 WP_171004465.1 D-alanyl-D-alanine carboxypeptidase family protein -
  GE024_RS01865 (GE024_01860) pbp3 348391..349629 (-) 1239 WP_093999417.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  GE024_RS01870 (GE024_01865) amiA 349959..351938 (+) 1980 WP_093999416.1 peptide ABC transporter substrate-binding protein Regulator
  GE024_RS01875 (GE024_01870) amiC 352004..353506 (+) 1503 WP_003046676.1 ABC transporter permease Regulator
  GE024_RS01880 (GE024_01875) amiD 353506..354432 (+) 927 WP_093999415.1 oligopeptide ABC transporter permease OppC Regulator
  GE024_RS01885 (GE024_01880) amiE 354441..355511 (+) 1071 WP_093999414.1 ABC transporter ATP-binding protein Regulator
  GE024_RS01890 (GE024_01885) amiF 355504..356427 (+) 924 WP_156667672.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72431.80 Da        Isoelectric Point: 4.9490

>NTDB_id=404840 GE024_RS01870 WP_093999416.1 349959..351938(+) (amiA) [Streptococcus canis strain HL_100]
MKKSKWLATLGVAVLSVSVLAACGSKNASGGSDATKTYKYVFVNDPKSLDYILSNGGGTTDVATQMVDGLLENDKYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDGKSEALYVVEDSIKNLKAYKNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNEKFLKSQGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFTVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGENDFGSEVEKDLATMGDEWKDVN
LDDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVIVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVDGGSVIQKLGIKAGESKDVVAAAGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVTKAVPFSGAFAWAGAKGPASVYYYKGMKLQDKPVTAKQYEKAKEKWLK
AKAKSNAEYAEKLADHVEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=404840 GE024_RS01870 WP_093999416.1 349959..351938(+) (amiA) [Streptococcus canis strain HL_100]
ATGAAGAAAAGTAAATGGTTAGCAACTCTAGGTGTTGCCGTATTATCAGTATCTGTCTTAGCAGCCTGCGGTAGTAAAAA
TGCTTCAGGTGGTTCAGATGCGACAAAAACGTACAAATATGTTTTTGTTAATGATCCAAAATCATTGGACTATATTTTGT
CTAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTCGATGGTCTTTTGGAAAATGACAAGTATGGTAACTTGGTA
CCATCACTTGCTAAAGATTGGAAAGTTTCAAAAGATGGCCTAACCTATACTTACACCCTTCGTGATGGTGTCTCTTGGTA
CACTGCTGATGGTGAAGAATATGCACCTGTAACAGCAGAAGATTTTGTGACTGGTCTTAAACACGCAGTGGATGGCAAGT
CTGAAGCTTTATATGTTGTTGAAGATTCCATCAAAAACCTAAAAGCTTATAAAAATGGTGAAGTCGATTTCAAAGAGGTT
GGTGTTAAAGCCCTTGACGACAAAACCGTTCAATACACCTTGAACAAACCTGAAAGTTATTGGAACTCCAAAACAACTTA
CAGTGTTCTTTTCCCAGTCAATGAAAAATTCTTGAAATCACAAGGTAAAGATTTTGGAACAACAGACCCATCGTCAATCC
TAGTTAACGGTGCTTACTTCTTGAGTGCCTTCACCTCAAAATCATCTATGGAATTTCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGCTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCACTGTTGCACGACTTTATCCAAATGACCCTACTTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTATGGCATGTTGACTGGTGATATTCGTCATTTAACATGGAACTTGAACCGTACTTCCTTCAAAAACACTAAGAAA
GACCCTGCACAACAAGATGCTGGTAAGAAAGCTCTTAACAACAAAGACTTCCGTCAAGCTATCCAGTTTGCCTTCGACCG
TGCGTCATTCCAAGCACAAACTGCAGGTCAAGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TGACAATTGGGGAAAATGACTTTGGTTCAGAAGTTGAAAAAGACCTTGCTACTATGGGTGATGAGTGGAAAGACGTTAAC
TTAGACGATGCTCAAGATGGATTTTATAATCCAGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTCTTACAGC
TGAAGGGGTAACCTTCCCAGTTCAATTAGATTACCCTGTTGACCAAGCAAACGCAGCAACTGTTCAGGAAGCCCAATCTT
TCAAACAATCCGTTGAAGCATCTCTTGGTAAAGAAAATGTCATTGTCAATGTTCTTGAAACAGAAACCTCAACTCACGAA
GCCCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGACATCATTTCATCATGGTGGGGTCCAGACTACCAAGA
CCCACGTACCTACCTTGATATCATGAGTCCAGTGGATGGTGGATCTGTTATCCAAAAACTTGGAATTAAAGCAGGTGAAA
GCAAAGATGTTGTGGCAGCTGCAGGCCTTGATACCTACCAAACTTTACTTGATGAAGCAGCAGCGATTACAGACGACAAC
GATGCGCGCTACAAGGCTTACGCAAAAGCACAAGCCTACCTTACTGATAGTGCTGTAGATATTCCAGTTGTGGCATTGGG
TGGCACTCCTCGAGTTACTAAAGCTGTTCCATTTAGCGGTGCCTTTGCCTGGGCAGGTGCTAAAGGTCCTGCTTCTGTAT
ATTATTACAAAGGAATGAAACTTCAAGACAAACCTGTCACAGCAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAA
GCAAAGGCTAAGTCAAACGCAGAATATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

51.282

100

0.516
  amiA3 Streptococcus thermophilus LMG 18311

50.679

100

0.51
  amiA3 Streptococcus thermophilus LMD-9

50.377

100

0.507

Multiple sequence alignment