Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GE024_RS01880 Genome accession   NZ_CP046521
Coordinates   353506..354432 (+) Length   308 a.a.
NCBI ID   WP_093999415.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 348506..359432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS01870 (GE024_01865) amiA 349959..351938 (+) 1980 WP_093999416.1 peptide ABC transporter substrate-binding protein Regulator
  GE024_RS01875 (GE024_01870) amiC 352004..353506 (+) 1503 WP_003046676.1 ABC transporter permease Regulator
  GE024_RS01880 (GE024_01875) amiD 353506..354432 (+) 927 WP_093999415.1 oligopeptide ABC transporter permease OppC Regulator
  GE024_RS01885 (GE024_01880) amiE 354441..355511 (+) 1071 WP_093999414.1 ABC transporter ATP-binding protein Regulator
  GE024_RS01890 (GE024_01885) amiF 355504..356427 (+) 924 WP_156667672.1 ABC transporter ATP-binding protein Regulator
  GE024_RS01895 (GE024_01890) - 356649..357600 (-) 952 Protein_320 IS30 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34830.85 Da        Isoelectric Point: 9.2024

>NTDB_id=404842 GE024_RS01880 WP_093999415.1 353506..354432(+) (amiD) [Streptococcus canis strain HL_100]
METIDKSKFRFVERDSRASEVIDAPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNADYWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTIGVILGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=404842 GE024_RS01880 WP_093999415.1 353506..354432(+) (amiD) [Streptococcus canis strain HL_100]
ATGGAAACGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTAGAGCCTCCGAAGTAATTGATGCCCCAGCTTA
TTCTTATTGGAAGTCAGTATTCCGTCAATTTTTCTCTAAAAAATCAACGATTTTCATGTTAATGATTTTAGTGACAATTT
TATTGATGAGTTTTATTTACCCAATGTTCGCTAACTATGACTTTGGTGATGTAAGCAATATTAACGACTTTTCAAAACGC
TATATTTGGCCAAATGCTGACTATTGGTTTGGAACAGATAAAAATGGTCAATCCTTATTTGATGGTGTCTGGTATGGTGC
CCGTAACTCTATCTTAATTTCTGTTATTGCAACACTGATTAACGTCACCATTGGGGTTATTTTAGGTGCTATTTGGGGAG
TCTCCAAAGCATTTGATAAAGTTATGATTGAAATTTATAACGTTATTTCAAATATCCCTTCCATGCTCATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGTTTCTGGAATTTGATTTTAGCTTTCTGTATTACTGGCTGGATTGGTGTTGCCTACTC
CATTCGTGTTCAGATTTTGCGTTACCGTGATTTGGAATATAACCTTGCTAGTCAAACCTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTACCTCAATTGGTTTCAGTTATTATGACCATGTTGTCACAAATGCTACCAGTTTATGTATCC
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACTACCACTCCAAGTCTAGGACGTTTGATTGCTAATTATTC
AAGCAATTTAACAACAAATGCCTACCTCTTCTGGATTCCTTTAGTTACTTTGATTTTAGTATCGTTACCATTGTATATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment