Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | GFX43_RS09380 | Genome accession | NZ_CP046448 |
| Coordinates | 1810367..1811437 (+) | Length | 356 a.a. |
| NCBI ID | WP_015483431.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain ZD01 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1805367..1816437
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFX43_RS09350 (GFX43_009350) | yqgY | 1805563..1805808 (-) | 246 | WP_003226300.1 | DUF2626 domain-containing protein | - |
| GFX43_RS09355 (GFX43_009355) | mgsR | 1806040..1806420 (+) | 381 | WP_003230147.1 | transcriptional regulator MgsR | - |
| GFX43_RS09365 (GFX43_009365) | rsbRD | 1806644..1807480 (+) | 837 | WP_015384093.1 | RsbT co-antagonist protein RsbRD | - |
| GFX43_RS09370 (GFX43_009370) | yqhB | 1807533..1808861 (-) | 1329 | WP_003230150.1 | hemolysin family protein | - |
| GFX43_RS09375 (GFX43_009375) | corA | 1809004..1809957 (+) | 954 | WP_015483432.1 | magnesium transporter CorA | - |
| GFX43_RS09380 (GFX43_009380) | comGA | 1810367..1811437 (+) | 1071 | WP_015483431.1 | competence protein ComGA | Machinery gene |
| GFX43_RS09385 (GFX43_009385) | comGB | 1811424..1812461 (+) | 1038 | WP_015483430.1 | comG operon protein ComGB | Machinery gene |
| GFX43_RS09390 (GFX43_009390) | comGC | 1812475..1812771 (+) | 297 | WP_014477332.1 | comG operon protein ComGC | Machinery gene |
| GFX43_RS09395 (GFX43_009395) | comGD | 1812761..1813192 (+) | 432 | WP_015384089.1 | comG operon protein ComGD | Machinery gene |
| GFX43_RS09400 (GFX43_009400) | comGE | 1813176..1813523 (+) | 348 | WP_015384088.1 | ComG operon protein 5 | Machinery gene |
| GFX43_RS09405 (GFX43_009405) | comGF | 1813549..1813932 (+) | 384 | WP_015384087.1 | ComG operon protein ComGF | Machinery gene |
| GFX43_RS09410 (GFX43_009410) | comGG | 1813933..1814307 (+) | 375 | WP_014480253.1 | ComG operon protein ComGG | Machinery gene |
| GFX43_RS09415 (GFX43_009415) | spoIITA | 1814379..1814558 (+) | 180 | WP_003230176.1 | YqzE family protein | - |
| GFX43_RS09420 (GFX43_009420) | yqzG | 1814600..1814926 (-) | 327 | WP_015384086.1 | YqzG/YhdC family protein | - |
| GFX43_RS09425 (GFX43_009425) | tapA | 1815196..1815957 (+) | 762 | WP_015384085.1 | amyloid fiber anchoring/assembly protein TapA | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 40458.64 Da Isoelectric Point: 9.0175
>NTDB_id=404394 GFX43_RS09380 WP_015483431.1 1810367..1811437(+) (comGA) [Bacillus subtilis strain ZD01]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYITTNNYDRWVYHEKD
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYITTNNYDRWVYHEKD
Nucleotide
Download Length: 1071 bp
>NTDB_id=404394 GFX43_RS09380 WP_015483431.1 1810367..1811437(+) (comGA) [Bacillus subtilis strain ZD01]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGTGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCATTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTGACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTAGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATATAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGTGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCATTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTGACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTAGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATATAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
99.719 |
100 |
0.997 |
| pilF | Thermus thermophilus HB27 |
36.827 |
99.157 |
0.365 |