Detailed information NTG0404400

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HWU09_RS07180
• Genome accession: NZ_CP058287
• Coordinates: 1499936..1501201 (+)
• Length: 421 a.a.
• NCBI ID: WP_237003357.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain AL04
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1494936..1506201

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU09_RS07165	-	1495086..1497119 (+)	2034	WP_237003354.1	type IA DNA topoisomerase	-
HWU09_RS07170	-	1497236..1498405 (+)	1170	WP_237003355.1	type IV secretion system protein	-
HWU09_RS07175	-	1498405..1499949 (+)	1545	WP_237003356.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HWU09_RS07180	comB10	1499936..1501201 (+)	1266	WP_237003357.1	DNA type IV secretion system protein ComB10	Machinery gene
HWU09_RS07185	-	1501271..1501564 (+)	294	WP_237003358.1	hypothetical protein	-
HWU09_RS07190	-	1501557..1501874 (+)	318	WP_150199108.1	hypothetical protein	-
HWU09_RS07195	-	1501876..1502178 (+)	303	WP_029647687.1	hypothetical protein	-
HWU09_RS07200	-	1502175..1503146 (+)	972	WP_237003359.1	ATPase, T2SS/T4P/T4SS family	-
HWU09_RS07205	-	1503143..1503616 (+)	474	WP_165519150.1	hypothetical protein	-
HWU09_RS07210	-	1503618..1503875 (+)	258	WP_237003360.1	hypothetical protein	-
HWU09_RS07215	-	1504416..1506107 (+)	1692	WP_237003953.1	type IV secretory system conjugative DNA transfer family protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 47547.94 Da
• Isoelectric Point: 10.1431

>NTDB_id=404400 HWU09_RS07180 WP_237003357.1 1499936..1501201(+) (comB10) [Helicobacter pylori strain AL04]
MGFFRVIRNAPIASIFIVLMLIFCAWFFLYDDSSPKAVKKYVKGKFPISDYLYKKADKKKILPQNNVVKQEIKEEEIKKS
CKGQITDGKGNLIDDDCNIIATQKQVNNLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSI
KNSVSNIKSKDKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGR
AVLIPKGSRAIGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNG
LLIGLTSGLTEAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIP
KNNEVLAKFFNEEKEQNNDTK

Nucleotide

• Length: 1266 bp

>NTDB_id=404400 HWU09_RS07180 WP_237003357.1 1499936..1501201(+) (comB10) [Helicobacter pylori strain AL04]
ATGGGCTTTTTTAGAGTAATTAGAAACGCACCGATTGCAAGTATCTTTATTGTTTTGATGCTTATTTTTTGCGCATGGTT
TTTCCTTTATGATGATAGTTCGCCTAAAGCAGTGAAAAAATATGTTAAAGGTAAGTTTCCAATCTCTGACTATCTCTACA
AAAAAGCGGACAAAAAGAAAATCCTACCACAGAACAATGTCGTTAAACAAGAGATTAAAGAAGAAGAAATTAAAAAATCT
TGTAAGGGTCAGATAACAGATGGTAAGGGTAATTTAATAGATGATGATTGCAATATTATAGCCACTCAAAAACAAGTTAA
TAATTTACCAAATTTGCCTAAGGATTTTAATAAAACGCTTATTAAACCGCAAAGTCCATCCTTCAACTACAATACCGCTA
ACGAAGAAGAAAAAACCCGCCTTGTGATTTTAGCGTCTCGTATTAGCAGCCAAAAAGAAACACAGCCTCCAACCTCTATA
AAAAATAGTGTTTCTAATATAAAATCCAAAGATAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTT
TAAAAGAAAAAATGTAGCGAGCAGTGAAAACAAACTTTTGAGAACGATTACGGCTGACAGAATGATCCCAGCCATTCTGA
TCACTCCTATTAGTAGTGAAATAGGGGGGAGTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGA
GCGGTTTTAATCCCTAAAGGGAGTAGAGCCATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAAT
TGCTTGGAATAGGATAATCACGCCACAAGGGGTCAATATCATACTAAGCGATGCTAAGGGGGCTGATGTCAAGGGCTATA
ACGGCATGATAGGCACACTCCATAACAAATATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGG
CTACTCATAGGTCTTACTAGCGGTCTTACCGAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGA
TTACATGATGATGCAAATGACGAGGCAAACTGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCA
GGATTAAGCCCATTATCACTATTAGAGAAGGAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCT
AAAAACAATGAAGTCTTAGCGAAATTTTTTAATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (202-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	54.483	68.884	0.375