Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HWU09_RS07155 | Genome accession | NZ_CP058287 |
| Coordinates | 1492401..1492667 (+) | Length | 88 a.a. |
| NCBI ID | WP_001173705.1 | Uniprot ID | A0A8J3FT93 |
| Organism | Helicobacter pylori strain AL04 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1487401..1497667
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWU09_RS07130 | - | 1488450..1489304 (-) | 855 | WP_237003350.1 | NAD(+)/NADH kinase | - |
| HWU09_RS07135 | - | 1489479..1490258 (+) | 780 | WP_237003351.1 | hypothetical protein | - |
| HWU09_RS07140 | - | 1490278..1490571 (+) | 294 | WP_154490397.1 | hypothetical protein | - |
| HWU09_RS07145 | - | 1490578..1492101 (+) | 1524 | WP_237003352.1 | toprim domain-containing protein | - |
| HWU09_RS07150 | - | 1492098..1492400 (+) | 303 | WP_031247542.1 | hypothetical protein | - |
| HWU09_RS07155 | comB3 | 1492401..1492667 (+) | 267 | WP_001173705.1 | hypothetical protein | Machinery gene |
| HWU09_RS07160 | comB4 | 1492714..1495083 (+) | 2370 | WP_237003353.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HWU09_RS07165 | - | 1495086..1497119 (+) | 2034 | WP_237003354.1 | type IA DNA topoisomerase | - |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 10162.98 Da Isoelectric Point: 4.8782
>NTDB_id=404398 HWU09_RS07155 WP_001173705.1 1492401..1492667(+) (comB3) [Helicobacter pylori strain AL04]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA
Nucleotide
Download Length: 267 bp
>NTDB_id=404398 HWU09_RS07155 WP_001173705.1 1492401..1492667(+) (comB3) [Helicobacter pylori strain AL04]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATTAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTATATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATTAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTATATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
42.169 |
94.318 |
0.398 |