Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   GFX43_RS09395 Genome accession   NZ_CP046448
Coordinates   1812761..1813192 (+) Length   143 a.a.
NCBI ID   WP_015384089.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1807761..1818192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS09375 (GFX43_009375) corA 1809004..1809957 (+) 954 WP_015483432.1 magnesium transporter CorA -
  GFX43_RS09380 (GFX43_009380) comGA 1810367..1811437 (+) 1071 WP_015483431.1 competence protein ComGA Machinery gene
  GFX43_RS09385 (GFX43_009385) comGB 1811424..1812461 (+) 1038 WP_015483430.1 comG operon protein ComGB Machinery gene
  GFX43_RS09390 (GFX43_009390) comGC 1812475..1812771 (+) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  GFX43_RS09395 (GFX43_009395) comGD 1812761..1813192 (+) 432 WP_015384089.1 comG operon protein ComGD Machinery gene
  GFX43_RS09400 (GFX43_009400) comGE 1813176..1813523 (+) 348 WP_015384088.1 ComG operon protein 5 Machinery gene
  GFX43_RS09405 (GFX43_009405) comGF 1813549..1813932 (+) 384 WP_015384087.1 ComG operon protein ComGF Machinery gene
  GFX43_RS09410 (GFX43_009410) comGG 1813933..1814307 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  GFX43_RS09415 (GFX43_009415) spoIITA 1814379..1814558 (+) 180 WP_003230176.1 YqzE family protein -
  GFX43_RS09420 (GFX43_009420) yqzG 1814600..1814926 (-) 327 WP_015384086.1 YqzG/YhdC family protein -
  GFX43_RS09425 (GFX43_009425) tapA 1815196..1815957 (+) 762 WP_015384085.1 amyloid fiber anchoring/assembly protein TapA -
  GFX43_RS09430 (GFX43_009430) sipW 1815941..1816513 (+) 573 WP_080030740.1 signal peptidase I SipW -
  GFX43_RS09435 (GFX43_009435) tasA 1816577..1817362 (+) 786 WP_003230183.1 biofilm matrix protein TasA -
  GFX43_RS09440 (GFX43_009440) sinR 1817455..1817790 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  GFX43_RS09445 (GFX43_009445) sinI 1817824..1817997 (-) 174 WP_003230187.1 anti-repressor SinI Regulator

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16064.60 Da        Isoelectric Point: 9.6754

>NTDB_id=404397 GFX43_RS09395 WP_015384089.1 1812761..1813192(+) (comGD) [Bacillus subtilis strain ZD01]
MNIKLNEEEGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVNGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=404397 GFX43_RS09395 WP_015384089.1 1812761..1813192(+) (comGD) [Bacillus subtilis strain ZD01]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTATCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAATGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

97.902

100

0.979

Multiple sequence alignment