Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FOB91_RS04570 Genome accession   NZ_CP046328
Coordinates   948595..950586 (-) Length   663 a.a.
NCBI ID   WP_012130757.1    Uniprot ID   P31306
Organism   Streptococcus gordonii strain FDAARGOS_683     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 943595..955586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB91_RS04550 (FOB91_04550) amiF 944098..945021 (-) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  FOB91_RS04555 (FOB91_04555) amiE 945032..946099 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  FOB91_RS04560 (FOB91_04560) amiD 946108..947034 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  FOB91_RS04565 (FOB91_04565) amiC 947034..948530 (-) 1497 WP_008809624.1 ABC transporter permease Regulator
  FOB91_RS04570 (FOB91_04570) amiA 948595..950586 (-) 1992 WP_012130757.1 peptide ABC transporter substrate-binding protein Regulator
  FOB91_RS04575 (FOB91_04575) amiA 950866..952848 (-) 1983 WP_012130758.1 peptide ABC transporter substrate-binding protein Regulator
  FOB91_RS04580 (FOB91_04580) amiA 953099..955057 (-) 1959 WP_012130760.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 73370.79 Da        Isoelectric Point: 5.0247

>NTDB_id=402674 FOB91_RS04570 WP_012130757.1 948595..950586(-) (amiA) [Streptococcus gordonii strain FDAARGOS_683]
MKKGKILALAGVALLATGVLAACSNSTSNSSNSSSSGADQVFNYIYEVDPENLNYLISSKAATTDLTANLIDGLLENDNY
GNLVPSMAEDWTVSKDGLTYTYTLRKDAKWYTSDGEEYADVKAQDFVAGLKYAADNKSETLYLVQSSIKGLDDYVNGKTK
DFSSVGVKAVDDHTVQYTLNEPESFWNSKTTMGILYPVNEEFLKSKGDKFAQSADPTSLLYNGPFLLKSITSKSSIEFAK
NPNYWDKDNVHVSDVKLTYFDGQDQGKPAEQFAKGALSAARLAPTSATFSKVEKEFKDNIVYTPQDSTSYLVGVNIDRQA
YNHTAKSSDAQKSSTKKALMNKDFRQALSFAFDRTAYASQVNGKEGATKMLRNLYIPPTFVQADGKSFGELVKEKVASYG
DEWKDVNFDDAQDGLYNKEKAKAEFAKAKKALQEEGVEFPIHLDMPVDQTATAKVQRVQSLKQSIESSLGTDNVVVDIHQ
MKTDDVLNITYYAASAAEEDWDISDNVGWSPDYQDPSTYLEIIKPGGENTKTFLGFDGKENAAAEQVGLKEYAKLVDEAA
AEKTDVNKRYEKYATAQAWLTDSALLIPTTSRTGRPVLTKIVPFTAPFAWSGAKGRDMASYKYLKLQDKAVTAKEYQKAQ
EKWNKERAESNKKAQEELEKHVK

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=402674 FOB91_RS04570 WP_012130757.1 948595..950586(-) (amiA) [Streptococcus gordonii strain FDAARGOS_683]
ATGAAGAAAGGTAAAATCCTTGCACTTGCGGGAGTTGCTCTCTTGGCTACTGGCGTTCTTGCAGCGTGCTCAAATTCTAC
ATCAAACTCATCAAACTCATCAAGCTCTGGCGCAGATCAAGTTTTTAACTATATCTACGAAGTTGATCCAGAAAACTTGA
ATTATTTGATCTCTAGTAAAGCAGCAACAACTGACCTTACAGCTAACTTGATCGATGGTCTTTTAGAAAATGACAACTAT
GGAAACTTGGTTCCATCGATGGCTGAAGATTGGACAGTGTCTAAGGATGGCTTGACTTATACTTATACACTTCGTAAGGA
TGCTAAATGGTATACTTCTGATGGTGAAGAGTATGCTGATGTCAAGGCCCAAGACTTTGTGGCAGGTCTAAAGTACGCTG
CTGACAACAAGTCTGAAACTCTTTATCTTGTTCAAAGTTCTATCAAGGGCTTGGATGACTACGTTAATGGTAAAACAAAG
GATTTCTCATCAGTTGGTGTTAAAGCAGTTGATGACCACACAGTTCAATATACTTTAAATGAGCCAGAAAGTTTCTGGAA
CTCTAAAACAACAATGGGTATCCTTTATCCAGTCAATGAAGAGTTCTTGAAGTCTAAAGGTGACAAGTTTGCTCAATCTG
CTGACCCAACTAGTCTTCTATACAACGGGCCATTCCTACTTAAATCTATCACATCTAAATCATCTATTGAATTTGCTAAA
AATCCAAATTACTGGGATAAAGATAATGTCCATGTGAGCGATGTTAAATTAACATATTTTGATGGGCAAGATCAAGGTAA
ACCAGCTGAGCAATTTGCTAAAGGTGCTCTCAGTGCAGCTAGACTAGCTCCTACAAGTGCTACCTTCTCTAAAGTCGAAA
AAGAATTCAAAGATAATATCGTTTATACTCCTCAAGATTCTACGAGCTATTTAGTTGGGGTGAACATTGATCGTCAAGCG
TACAATCACACAGCTAAATCAAGTGATGCACAAAAATCATCAACAAAGAAAGCTTTGATGAACAAAGATTTCCGTCAAGC
TTTGAGTTTTGCATTCGACAGAACGGCTTATGCTTCACAAGTTAATGGTAAAGAAGGGGCTACGAAAATGCTCCGCAATC
TCTACATTCCACCTACTTTTGTTCAGGCAGATGGTAAGAGCTTCGGCGAACTTGTGAAAGAAAAAGTGGCTAGCTATGGA
GATGAGTGGAAAGATGTAAACTTCGACGATGCTCAAGATGGCCTTTACAATAAGGAAAAAGCAAAGGCTGAATTTGCGAA
AGCTAAAAAAGCTCTTCAAGAAGAAGGTGTAGAATTCCCTATTCATTTGGATATGCCAGTAGACCAAACTGCTACTGCTA
AAGTTCAGCGTGTTCAATCTTTGAAACAATCAATTGAGAGCTCGCTTGGGACAGACAATGTGGTTGTTGACATTCATCAA
ATGAAGACTGATGATGTTTTGAACATCACCTATTATGCTGCTTCAGCTGCCGAAGAAGATTGGGATATTTCTGATAATGT
TGGTTGGTCTCCTGACTATCAAGATCCATCAACTTATCTTGAAATTATCAAGCCTGGCGGTGAAAACACCAAAACATTCT
TAGGGTTTGATGGTAAAGAAAATGCAGCTGCAGAACAAGTTGGTTTGAAGGAGTATGCTAAGCTGGTTGATGAAGCTGCC
GCTGAAAAGACAGATGTAAATAAACGCTATGAAAAATATGCAACTGCTCAAGCATGGCTAACAGATAGCGCCTTGTTGAT
ACCAACAACAAGTAGGACTGGACGTCCAGTTTTAACTAAGATTGTACCATTTACAGCTCCTTTTGCTTGGTCTGGTGCTA
AAGGTCGTGACATGGCAAGTTACAAATATCTGAAATTACAAGATAAAGCTGTCACAGCCAAAGAATATCAGAAAGCTCAA
GAAAAATGGAATAAAGAACGTGCAGAATCTAATAAAAAAGCACAAGAAGAGTTAGAAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(83-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P31306

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.301

100

0.605
  amiA3 Streptococcus thermophilus LMD-9

59.549

100

0.597
  amiA3 Streptococcus thermophilus LMG 18311

59.098

100

0.593

Multiple sequence alignment