Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   FOB91_RS04565 Genome accession   NZ_CP046328
Coordinates   947034..948530 (-) Length   498 a.a.
NCBI ID   WP_008809624.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_683     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 942034..953530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB91_RS04545 (FOB91_04545) comR/comR2 943414..943896 (-) 483 WP_012130755.1 sigma-70 family RNA polymerase sigma factor Regulator
  FOB91_RS04550 (FOB91_04550) amiF 944098..945021 (-) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  FOB91_RS04555 (FOB91_04555) amiE 945032..946099 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  FOB91_RS04560 (FOB91_04560) amiD 946108..947034 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  FOB91_RS04565 (FOB91_04565) amiC 947034..948530 (-) 1497 WP_008809624.1 ABC transporter permease Regulator
  FOB91_RS04570 (FOB91_04570) amiA 948595..950586 (-) 1992 WP_012130757.1 peptide ABC transporter substrate-binding protein Regulator
  FOB91_RS04575 (FOB91_04575) amiA 950866..952848 (-) 1983 WP_012130758.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55567.53 Da        Isoelectric Point: 9.9197

>NTDB_id=402673 FOB91_RS04565 WP_008809624.1 947034..948530(-) (amiC) [Streptococcus gordonii strain FDAARGOS_683]
MKKYIFMRILRSLVSIFLVTALTYTIIYTMVPRKLIFKQDPNYNKIATTKDKKANYENTIYERMGYVDYYDTKELQEKAS
KEDSSVTVEGTDANKKIYEAYIKKLGNGWKLHQFEESKQFYAVREVPVLERVLGFYGNLIQFDHTGFVKDETNPKLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNAQFPFVHQNFVTLNLGNSYPTYANIPVLQVISQGQGQTKSSEVQFPTGKKTSSV
NIYSRTYKSPSKADSRDIANYGKDDPYTATESNYQYPSMLVSSAIIGLIGIAISYLIAVPLGSYMARFKNTWIDSSLTGL
LTFLLALPTIALVYIIRLGGSSVGLPDSFPVLGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIQGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTGLSVFALLLGD
ILMTMLDPRIKLTTKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=402673 FOB91_RS04565 WP_008809624.1 947034..948530(-) (amiC) [Streptococcus gordonii strain FDAARGOS_683]
ATGAAGAAATATATATTTATGCGTATCTTACGCTCCCTGGTGTCGATTTTCTTAGTAACGGCTTTGACCTATACCATTAT
TTATACAATGGTGCCAAGAAAATTGATTTTTAAACAGGATCCTAACTATAACAAGATAGCAACCACAAAAGATAAAAAAG
CCAATTACGAAAACACAATCTATGAACGTATGGGCTATGTGGATTATTATGATACGAAAGAGTTACAGGAGAAAGCTAGC
AAGGAAGATAGCTCTGTAACGGTTGAAGGAACTGATGCAAACAAAAAAATCTACGAAGCTTATATCAAAAAATTAGGTAA
TGGCTGGAAGCTTCACCAGTTTGAAGAAAGTAAGCAATTTTATGCTGTTCGTGAGGTACCAGTTCTTGAACGTGTTCTTG
GCTTCTACGGAAATTTGATTCAATTTGACCATACTGGTTTTGTCAAAGATGAAACGAATCCAAAACTTAAACGTTATATT
CGTATTGAAAACGATCCAGCTATTGGTTGGTCTGTAGTTGGATCAGGTACTAAGCATAAATATTTACTATACTTTAATGC
TCAATTTCCGTTTGTTCATCAAAATTTTGTGACCTTGAACTTAGGAAATTCTTACCCAACTTATGCAAATATTCCTGTGT
TACAGGTTATTTCACAAGGGCAAGGACAAACTAAATCATCTGAGGTTCAATTCCCTACAGGAAAGAAAACTTCATCAGTT
AATATCTATTCACGTACTTACAAGTCACCAAGTAAAGCTGATTCGCGAGATATTGCAAACTATGGAAAAGATGATCCATA
TACAGCTACAGAGAGCAACTATCAATATCCATCCATGCTTGTTAGCTCAGCAATTATTGGTTTGATTGGTATTGCGATCT
CTTATCTGATTGCTGTCCCATTAGGATCTTACATGGCTCGCTTCAAAAACACTTGGATTGATAGTTCATTAACAGGTCTC
TTGACCTTCCTTTTGGCCCTGCCAACAATTGCCTTAGTTTATATTATTCGCTTAGGTGGTTCTTCGGTTGGTCTTCCAGA
TTCTTTCCCAGTTCTTGGTGCAGGAGACTGGCGTTCGTATGTTCTTCCGGCAGTTATTCTGGGACTTTTGGGGGCGCCAA
GCACAGCTATCTGGATTCGTCGTTATATGATCGACTTGCAATCCCAAGACTTTGTACGTTTTGCCCGGGCTAAAGGATTA
TCTGAAAAAGAAATTTCAAATAAACACATTTTCAAAAATGCCATGGTTCCATTGGTATCAGGAATTCCAGGAGCCGTTAT
CGGAGTTATTCAAGGGGCAACCTTGACAGAGACTGTCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATCGACTCAGTTA
AAGCTTCAAATAATTCTATGGTAGTCGGATTGGTCTTCATTTTCACTGGTTTATCAGTCTTTGCCTTACTCTTAGGTGAT
ATTTTGATGACAATGCTTGACCCACGTATTAAATTAACAACAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

79.116

100

0.791
  amiC Streptococcus thermophilus LMG 18311

78.514

100

0.785
  amiC Streptococcus thermophilus LMD-9

78.313

100

0.783

Multiple sequence alignment