Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   FOB91_RS04550 Genome accession   NZ_CP046328
Coordinates   944098..945021 (-) Length   307 a.a.
NCBI ID   WP_012130756.1    Uniprot ID   A0AAQ2V108
Organism   Streptococcus gordonii strain FDAARGOS_683     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 939098..950021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB91_RS04545 (FOB91_04545) comR/comR2 943414..943896 (-) 483 WP_012130755.1 sigma-70 family RNA polymerase sigma factor Regulator
  FOB91_RS04550 (FOB91_04550) amiF 944098..945021 (-) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  FOB91_RS04555 (FOB91_04555) amiE 945032..946099 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  FOB91_RS04560 (FOB91_04560) amiD 946108..947034 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  FOB91_RS04565 (FOB91_04565) amiC 947034..948530 (-) 1497 WP_008809624.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34922.14 Da        Isoelectric Point: 6.7109

>NTDB_id=402670 FOB91_RS04550 WP_012130756.1 944098..945021(-) (amiF) [Streptococcus gordonii strain FDAARGOS_683]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNETSKGEIFFDGKQINGKKSRK
ESSEIIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEERIQKVKNIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPDQHDYSVEKPEMVEIKPGHFVWANKTEVENYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=402670 FOB91_RS04550 WP_012130756.1 944098..945021(-) (amiF) [Streptococcus gordonii strain FDAARGOS_683]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTTGGTGAAGGGAAGAAGAAATTTGTAGCTGTTAAAAA
TGCAAATTTCTTTATTAATAGAGGAGAAACTTTCTCACTCGTAGGTGAATCCGGCTCAGGGAAAACTACAATCGGTCGCG
CAATCATTGGTTTGAATGAGACGAGTAAAGGTGAAATCTTCTTTGATGGAAAGCAGATTAATGGGAAGAAGTCTAGAAAA
GAATCTTCGGAAATTATTCGTAAGATTCAAATGATATTCCAGGATCCTGCTGCGAGCTTAAACGAGCGTGCAACAGTTGA
CTATATCATTTCTGAGGGCTTGTACAACTATCACTTGTTTGAAAATGAAGAAGAAAGAATACAAAAGGTTAAAAATATTA
TTCATGAAGTTGGATTGCTTTCCGAACATTTGACGCGTTATCCGCATGAATTTTCAGGAGGACAACGTCAACGTATTGGG
ATAGCGCGCGCTTTAGTCATGCAACCAGATTTCGTTATTGCTGATGAACCAATTTCTGCTTTGGATGTATCCGTTCGTGC
TCAAGTGCTAAATCTTCTAAAGAAATTCCAAAAAGAACTGGGGTTGACCTATCTATTTATCGCTCACGATTTGTCAGTGG
TACGTTTCATTTCAGATCGTATTGCAGTAATCTATAAAGGTGTAATTGTTGAAGTAGCTGAAACGGAAGAGCTCTTTAAT
AACCCAATTCATCCTTATACCAAATCGTTATTATCAGCCGTTCCAATTCCAGATCCAATCTTAGAACGTAAAAAAGTACT
TAAAGTCTACGATCCGGATCAACATGACTATTCAGTTGAAAAACCTGAAATGGTTGAAATTAAACCTGGCCACTTTGTTT
GGGCTAACAAAACCGAAGTAGAGAACTATAAAAAAGAGCTCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86
  amiF Streptococcus salivarius strain HSISS4

85.621

99.674

0.853

Multiple sequence alignment