Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | FOC43_RS02240 | Genome accession | NZ_CP046317 |
| Coordinates | 449684..449989 (-) | Length | 101 a.a. |
| NCBI ID | WP_002834517.1 | Uniprot ID | A0A5T0ZVB2 |
| Organism | Campylobacter coli strain FDAARGOS_735 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 444684..454989
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOC43_RS02205 (FOC43_02205) | - | 445099..445860 (+) | 762 | WP_025431509.1 | ATP-binding protein | - |
| FOC43_RS02210 (FOC43_02210) | - | 445857..446540 (+) | 684 | WP_002791740.1 | 3-methyladenine DNA glycosylase | - |
| FOC43_RS02215 (FOC43_02215) | thiD | 446540..447352 (+) | 813 | WP_002797568.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| FOC43_RS02220 (FOC43_02220) | thiE | 447342..447974 (+) | 633 | WP_002834515.1 | thiamine phosphate synthase | - |
| FOC43_RS02225 (FOC43_02225) | - | 447952..448581 (+) | 630 | WP_002777119.1 | uroporphyrinogen-III synthase | - |
| FOC43_RS02230 (FOC43_02230) | - | 448574..449026 (-) | 453 | WP_002777117.1 | hypothetical protein | - |
| FOC43_RS02235 (FOC43_02235) | - | 449023..449691 (-) | 669 | WP_002797569.1 | hypothetical protein | - |
| FOC43_RS02240 (FOC43_02240) | ctsT | 449684..449989 (-) | 306 | WP_002834517.1 | hypothetical protein | Machinery gene |
| FOC43_RS02245 (FOC43_02245) | proC | 449986..450723 (-) | 738 | WP_002834520.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| FOC43_RS02250 (FOC43_02250) | fliW | 450723..451112 (-) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| FOC43_RS02255 (FOC43_02255) | - | 451276..451923 (+) | 648 | WP_002777091.1 | outer membrane protein assembly factor BamD | - |
| FOC43_RS02260 (FOC43_02260) | lon | 451939..454314 (+) | 2376 | WP_002783351.1 | endopeptidase La | - |
| FOC43_RS02265 (FOC43_02265) | rpsR | 454370..454630 (-) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12456.28 Da Isoelectric Point: 6.0633
>NTDB_id=402615 FOC43_RS02240 WP_002834517.1 449684..449989(-) (ctsT) [Campylobacter coli strain FDAARGOS_735]
MKVAFSLLELILYIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLELILYIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=402615 FOC43_RS02240 WP_002834517.1 449684..449989(-) (ctsT) [Campylobacter coli strain FDAARGOS_735]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTATATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTATATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
50 |
97.03 |
0.485 |