Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   SSAL_RS07600 Genome accession   NC_017594
Coordinates   1643873..1645858 (-) Length   661 a.a.
NCBI ID   WP_045001894.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1638873..1650858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS07570 (Ssal_01669) rsmI 1640091..1640957 (-) 867 WP_014633487.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  SSAL_RS07575 (Ssal_01670) yabA 1640960..1641280 (-) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  SSAL_RS07580 (Ssal_01671) yaaT 1641267..1642073 (-) 807 WP_014633488.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  SSAL_RS07585 (Ssal_01672) - 1642070..1642945 (-) 876 WP_014633489.1 DNA polymerase III subunit delta' -
  SSAL_RS07590 (Ssal_01673) tmk 1642954..1643583 (-) 630 WP_013991005.1 dTMP kinase -
  SSAL_RS07600 (Ssal_01674) recP/tkt 1643873..1645858 (-) 1986 WP_045001894.1 transketolase Machinery gene
  SSAL_RS07605 (Ssal_01675) tpiA 1646118..1646876 (-) 759 WP_002890214.1 triose-phosphate isomerase -
  SSAL_RS07610 (Ssal_01677) tuf 1647131..1648327 (-) 1197 WP_002890213.1 elongation factor Tu -
  SSAL_RS07615 (Ssal_01678) - 1648564..1649844 (-) 1281 WP_045002097.1 FtsW/RodA/SpoVE family cell cycle protein -
  SSAL_RS07620 (Ssal_01679) - 1650120..1650536 (-) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70845.52 Da        Isoelectric Point: 4.7666

>NTDB_id=40202 SSAL_RS07600 WP_045001894.1 1643873..1645858(-) (recP/tkt) [Streptococcus salivarius 57.I]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVTMDDLKNFRQWGSKTPGHPEVNHTDGIEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEVGIKFRGEAAENAWQTKFAEYE
AAYPELAAEYKAAFANEPVHVDLNAHEVGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQPDNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAEAGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=40202 SSAL_RS07600 WP_045001894.1 1643873..1645858(-) (recP/tkt) [Streptococcus salivarius 57.I]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGGCACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTGCTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CAAGCCGTAACTGGACAAACCGAGACCGTTTTGTTCTTTCTGCAGGTCATGGTTCTGCCTTGCTTTATAGTCTCTTGCAC
CTTTCTGGCTACGACGTGACAATGGACGACTTGAAGAACTTCCGTCAATGGGGATCTAAGACTCCAGGTCACCCTGAAGT
TAACCATACAGATGGTATTGAAGCAACATCAGGTCCTCTTGGTCAAGGAATTGCTAATGCTGTAGGTATGGCAATGGCTG
AAGCACACTTGGCAGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCCCTCCATGGCGATGGA
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCTAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTACTTCTTTACGA
TTCAAATGATATCTCACTTGATGGGCCAACTTCAATGGCTTTCACTGAAGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTCAAAGATGGTAATGATTTGGAAGCTATCGCTAAAGCTATCGAAGAAGCTAAAGCTGAGACAGAT
AAACCATCTATTATCGAAGTTAAGACAATCATTGGTTACGGAGCTGAAGGACAAGGAACATCAGCTGTCCACGGTGCTCC
AATTGGTCAAGACGGCATTGATCATGCAAAAGGTGTTTATGGTTACGATGCACCAGCATTTACAGTTCCAGATGAAGTCG
CACGTCGTTTCGAAGTTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
GCTGCTTACCCAGAATTGGCTGCGGAATACAAGGCTGCCTTTGCGAATGAACCTGTACACGTTGACTTGAATGCTCATGA
AGTGGGTTCAGCAGTAGCTAGCCGTGTGTCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAACCAGACAACTATGCTGGA
CGTAATATTTGGTTCGGTGTACGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGCGT
TTATGGTGGTACTTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCACTTCAAAACTTGCCAGTAA
CTTATGTTATGACTCACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCTTGGAAACGTGCCTTGGCTGA
GACTGAACGTCCAACAATGCTAGTTTTGACACGTCAAAACTTGCCAGTCCTTGATGGTACAGCTGAAAATGCTGAAGCTG
GTGTCAATAAAGGGGCTTACATTATCTCAGAAGCTAAAGGTGATCTTGATGGTATCATCATTGCGACTGGTTCTGAAGTG
AAATTGGCTCTTGATACTCAAGCGGCTCTTGAAGCTGAAGGCGTGCATGTCCGTGTTGTTTCAATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTTCTTCCAGCAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATACGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.687

99.546

0.564

Multiple sequence alignment