Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SOR_RS05710 Genome accession   NC_015291
Coordinates   1145962..1146918 (-) Length   318 a.a.
NCBI ID   WP_000495872.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1140962..1151918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS05690 (SOR_1166) ftsW 1141007..1142230 (-) 1224 WP_000703341.1 cell division peptidoglycan polymerase FtsW -
  SOR_RS05695 (SOR_1167) prsA 1142417..1143358 (-) 942 WP_000728079.1 peptidylprolyl isomerase PrsA -
  SOR_RS05700 (SOR_1168) - 1143426..1144139 (-) 714 WP_000230397.1 O-methyltransferase -
  SOR_RS05705 (SOR_1169) pepF 1144141..1145943 (-) 1803 WP_000244093.1 oligoendopeptidase F Regulator
  SOR_RS05710 (SOR_1170) coiA 1145962..1146918 (-) 957 WP_000495872.1 competence protein CoiA Machinery gene
  SOR_RS05715 (SOR_1171) - 1146996..1148144 (-) 1149 WP_000202637.1 DUF1887 family protein -
  SOR_RS05720 (SOR_1172) tehB 1148322..1149182 (-) 861 WP_000413067.1 SAM-dependent methyltransferase TehB -
  SOR_RS05725 (SOR_1173) smpB 1149197..1149664 (-) 468 WP_001051740.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37750.34 Da        Isoelectric Point: 9.5513

>NTDB_id=40200 SOR_RS05710 WP_000495872.1 1145962..1146918(-) (coiA) [Streptococcus oralis Uo5]
MFVARDAKGKLVNALEKDVTKQAYTCPACGGGLRLRQGPRIRTHFAHERLRDCMAIFENESPEHLGNKEALYHWAKKDNQ
VALEYSLPAIQQIADVLVNEKLALEVQCSPLSQKLLGDRSQGYRSQGYQVIWLLGEKLWLKERLTQLQRGFLYFSQNMGF
YVWELDLKKQVLRLKYLLHQDLRGKLHFQVKEFPYGQGNLLEILRFPYQKQKLASLTVSQDSTICHYIRQQLYYQMPYWM
KKQEEAYHQGDNLLNRQLDDWYPQVRPIESGDFLQIETDLTSYYRNFQAYYQKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=40200 SOR_RS05710 WP_000495872.1 1145962..1146918(-) (coiA) [Streptococcus oralis Uo5]
ATGTTTGTAGCCAGAGATGCCAAGGGGAAATTGGTGAATGCCCTCGAAAAAGATGTTACCAAGCAAGCTTATACTTGTCC
AGCCTGTGGTGGTGGACTACGATTACGCCAAGGACCGAGGATTCGAACGCACTTTGCCCATGAAAGGTTAAGAGATTGTA
TGGCTATTTTTGAGAATGAAAGTCCAGAACACTTGGGTAACAAAGAGGCCCTTTATCACTGGGCCAAGAAGGACAATCAG
GTCGCCTTAGAATATAGTCTGCCTGCGATTCAGCAGATAGCAGATGTTCTCGTCAATGAAAAACTAGCTCTTGAGGTTCA
GTGCAGTCCCTTGTCTCAAAAGCTTCTAGGCGATAGAAGTCAAGGATACCGCAGCCAGGGCTATCAGGTTATCTGGTTAC
TGGGAGAAAAACTCTGGTTAAAAGAGCGATTAACACAATTGCAAAGGGGATTTCTCTATTTTAGTCAAAATATGGGATTC
TATGTTTGGGAACTAGATCTCAAAAAGCAAGTTTTGAGACTTAAATACCTTTTACATCAGGACCTACGTGGCAAACTTCA
TTTTCAGGTCAAGGAATTTCCCTATGGCCAAGGAAATCTCTTGGAAATTCTACGATTTCCTTATCAAAAACAAAAGCTAG
CTAGTCTTACAGTTTCTCAAGATTCAACTATCTGTCACTACATTCGCCAACAGTTGTACTACCAAATGCCTTACTGGATG
AAGAAGCAAGAAGAGGCCTATCATCAAGGAGACAATCTATTAAACCGTCAACTGGACGACTGGTATCCCCAGGTCAGACC
GATAGAGTCAGGTGATTTTTTGCAGATTGAAACGGATTTGACTAGCTATTATAGAAATTTTCAGGCCTACTATCAAAAAA
ATCCTAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

71.384

100

0.714
  coiA Streptococcus pneumoniae D39

71.384

100

0.714
  coiA Streptococcus pneumoniae R6

71.384

100

0.714
  coiA Streptococcus mitis NCTC 12261

71.384

100

0.714
  coiA Streptococcus pneumoniae TIGR4

71.069

100

0.711
  coiA Lactococcus lactis subsp. cremoris KW2

41.538

100

0.425

Multiple sequence alignment