Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SOR_RS05705 Genome accession   NC_015291
Coordinates   1144141..1145943 (-) Length   600 a.a.
NCBI ID   WP_000244093.1    Uniprot ID   F2QDV8
Organism   Streptococcus oralis Uo5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1139141..1150943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS05690 (SOR_1166) ftsW 1141007..1142230 (-) 1224 WP_000703341.1 cell division peptidoglycan polymerase FtsW -
  SOR_RS05695 (SOR_1167) prsA 1142417..1143358 (-) 942 WP_000728079.1 peptidylprolyl isomerase PrsA -
  SOR_RS05700 (SOR_1168) - 1143426..1144139 (-) 714 WP_000230397.1 O-methyltransferase -
  SOR_RS05705 (SOR_1169) pepF 1144141..1145943 (-) 1803 WP_000244093.1 oligoendopeptidase F Regulator
  SOR_RS05710 (SOR_1170) coiA 1145962..1146918 (-) 957 WP_000495872.1 competence protein CoiA Machinery gene
  SOR_RS05715 (SOR_1171) - 1146996..1148144 (-) 1149 WP_000202637.1 DUF1887 family protein -
  SOR_RS05720 (SOR_1172) tehB 1148322..1149182 (-) 861 WP_000413067.1 SAM-dependent methyltransferase TehB -
  SOR_RS05725 (SOR_1173) smpB 1149197..1149664 (-) 468 WP_001051740.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69755.66 Da        Isoelectric Point: 4.5986

>NTDB_id=40199 SOR_RS05705 WP_000244093.1 1144141..1145943(-) (pepF) [Streptococcus oralis Uo5]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEKVQTAAQYEGHLLDSADSLLEITEFSLDLERQVEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLEQAFSFYEPEFMEISEEQYAAFLEAQPKLQVYKHFFDKLLQKKDHVLSQREEELLAGA
GEIFGAASETFAILDNADITFPYVLDDEGKEVQLSHGTYSRLMESKNREVRRGAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVDYSFTYEEALK
KAEEALAVLGDDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=40199 SOR_RS05705 WP_000244093.1 1144141..1145943(-) (pepF) [Streptococcus oralis Uo5]
ATGGTATTACAACGACATGAAATAAATGAAAAAGATACATGGGATCTTTCGACAATCTACCCAACAGACCAGGCTTGGGA
AGAAGCCTTGAAAGATTTAACTGAAAAAGTACAAACAGCAGCCCAGTATGAGGGGCATCTCTTGGACAGCGCAGACAGTT
TGCTTGAGATCACAGAATTCTCACTTGACTTGGAACGCCAAGTTGAAAAGCTTTATGTCTATGCGCATATGAAAAATGAT
CAGGACACGCGTGAAGCCAAGTATCAAGAGTACTATGCTAAGGCAATGACCCTATACAGTCAGTTAGAACAAGCCTTTTC
ATTCTATGAACCTGAGTTTATGGAGATTAGCGAAGAGCAGTATGCGGCCTTCCTAGAAGCTCAACCAAAACTCCAAGTTT
ACAAGCACTTTTTTGACAAGCTCTTGCAAAAGAAAGACCATGTTCTTTCGCAACGTGAGGAAGAATTGCTTGCTGGAGCA
GGAGAAATTTTTGGCGCTGCTAGTGAAACCTTTGCTATTTTGGACAATGCAGATATCACCTTTCCATACGTCTTGGATGA
TGAAGGCAAGGAAGTACAGCTCTCTCACGGAACATATTCTCGCTTGATGGAATCTAAAAATCGTGAAGTGCGCCGTGGTG
CCTATGAAGCCCTCTATGCGACTTACGAGCAATTCCAACATACTTATGCGAAGACATTGCAAACAAATGTCAAGGTGCAA
AACTACCGAGCAAAAGTTCGCAACTATAAGAGTGCTCGCCATGCAGCCCTCGCGGCAAACTTTGTTCCAGAAAGTGTCTA
TGACAATCTAGTAGCTGCAGTTCGCAAGCATTTGCCACTCTTGCATCGTTACCTAGAACTTCGTTCTAAAATCTTGGGTA
TTTCCGACCTCAAGATGTACGATGTCTACACTCCACTATCTTCAGTAGATTATAGCTTTACCTACGAAGAAGCCTTGAAA
AAGGCAGAAGAAGCTTTGGCAGTTTTAGGTGACGACTACTTGAGCCGTGTTAAACGTGCCTTCAGTGAGCGTTGGATTGA
TGTCTATGAAAACCAAGGCAAGCGTTCAGGTGCCTACTCTGGTGGTTCTTATGATACCAATGCCTTTATGCTTCTCAACT
GGCAGGATAATCTAGATAATCTTTTTACCCTTGTTCATGAAACAGGCCACAGTATGCACTCAAGCTATACTCGTGAAACC
CAGCCTTATGTTTACGGAGATTATTCTATCTTCTTGGCGGAGATTGCCTCAACGACCAATGAAAATATCTTGACAGAAAA
ATTATTGGAAGAAGTAGAAGACGATGCGACACGCTTTGCTATCCTCAATAACTTCCTGGACGGTTTCCGTGGAACAGTCT
TCCGTCAAACTCAATTCGCTGAGTTTGAACATGCCATCCACCAAGCAGACCAAAATGGAGAAGTCTTGACAAGTGATTTC
CTCAATAAACTCTACGCTGACCTGAACCAAGAGTACTATGGACTCAGCAAGGAAGACAATCCTCAGATCCAATACGAGTG
GGCACGCATTCCGCATTTCTACTATAACTACTATGTTTATCAGTATTCAACAGGTTTTGCAGCAGCTTCAGCCTTGGCTG
AGAAGATTGTCCATGGTAGTCAAGAAGATCGTGACCGCTATATCGACTACCTCAAGGCAGGTAAATCTGACTATCCACTC
AATGTCATGAGAAAAGCAGGAGTGGATATGGAGAAGGAAGACTATCTCAACGATGCCTTTGCAGTCTTTGAACGTCGCTT
GAACGAGTTTGAAGCCCTTGTTGAAAAATTGGGACTAGCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2QDV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.114

99.333

0.667

Multiple sequence alignment