Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GFS31_RS00040 Genome accession   NZ_CP046155
Coordinates   10270..10638 (+) Length   122 a.a.
NCBI ID   WP_198806304.1    Uniprot ID   A0A7T5DZM9
Organism   Leptolyngbya sp. BL0902     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5270..15638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFS31_RS00025 (GFS31_00050) - 5679..5885 (-) 207 WP_198806301.1 glycogen debranching protein -
  GFS31_RS00030 (GFS31_00060) hmpF 5981..7741 (-) 1761 WP_198806302.1 pilus motility taxis protein HmpF -
  GFS31_RS00035 (GFS31_00080) - 8609..9871 (+) 1263 WP_317135051.1 response regulator -
  GFS31_RS00040 (GFS31_00090) pilH 10270..10638 (+) 369 WP_198806304.1 response regulator transcription factor Machinery gene
  GFS31_RS00045 (GFS31_00100) - 10658..11188 (+) 531 WP_198806305.1 chemotaxis protein CheW -
  GFS31_RS00050 (GFS31_00110) pilJ 11249..13882 (+) 2634 WP_198806306.1 methyl-accepting chemotaxis protein Machinery gene

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13453.55 Da        Isoelectric Point: 4.6899

>NTDB_id=401698 GFS31_RS00040 WP_198806304.1 10270..10638(+) (pilH) [Leptolyngbya sp. BL0902]
MSTVLVVEDSLPQREMITSLLRGVGLQVDTAGDGVEALEHLQGQLPDVIVLDIVMPRMNGYELCRKLKADPSTQHVPVVL
CSSKGEEFDRYWGMKQGADAYIAKPFQPAELVGTVKQLLRES

Nucleotide


Download         Length: 369 bp        

>NTDB_id=401698 GFS31_RS00040 WP_198806304.1 10270..10638(+) (pilH) [Leptolyngbya sp. BL0902]
ATGAGTACAGTCTTGGTGGTAGAGGATAGCCTGCCGCAGCGAGAAATGATTACTAGCTTGCTTCGGGGGGTTGGCCTACA
GGTAGATACCGCCGGGGATGGGGTGGAAGCCCTCGAACATCTTCAGGGGCAACTCCCGGATGTGATTGTGCTGGATATTG
TCATGCCTCGGATGAACGGCTACGAGCTGTGCCGTAAGTTGAAGGCGGATCCCTCTACCCAGCATGTGCCCGTAGTGCTG
TGTTCCTCCAAGGGGGAAGAGTTCGACCGCTATTGGGGGATGAAACAAGGGGCCGACGCCTACATCGCCAAGCCCTTTCA
GCCCGCCGAACTGGTGGGCACCGTCAAGCAACTGCTCCGGGAATCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T5DZM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

71.074

99.18

0.705
  micA Streptococcus pneumoniae Cp1015

38.525

100

0.385
  vicR Streptococcus mutans UA159

36.885

100

0.369
  pilL-C Synechocystis sp. PCC 6803

36.667

98.361

0.361
  pilG Acinetobacter baumannii strain A118

38.596

93.443

0.361

Multiple sequence alignment