Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   GFS31_RS00050 Genome accession   NZ_CP046155
Coordinates   11249..13882 (+) Length   877 a.a.
NCBI ID   WP_198806306.1    Uniprot ID   A0A7T5DZR5
Organism   Leptolyngbya sp. BL0902     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6249..18882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFS31_RS00035 (GFS31_00080) - 8609..9871 (+) 1263 WP_317135051.1 response regulator -
  GFS31_RS00040 (GFS31_00090) pilH 10270..10638 (+) 369 WP_198806304.1 response regulator transcription factor Machinery gene
  GFS31_RS00045 (GFS31_00100) - 10658..11188 (+) 531 WP_198806305.1 chemotaxis protein CheW -
  GFS31_RS00050 (GFS31_00110) pilJ 11249..13882 (+) 2634 WP_198806306.1 methyl-accepting chemotaxis protein Machinery gene
  GFS31_RS00055 (GFS31_00120) - 13946..18631 (+) 4686 WP_198806307.1 hybrid sensor histidine kinase/response regulator -

Sequence

Protein


Download         Length: 877 a.a.        Molecular weight: 92789.51 Da        Isoelectric Point: 3.8570

>NTDB_id=401699 GFS31_RS00050 WP_198806306.1 11249..13882(+) (pilJ) [Leptolyngbya sp. BL0902]
MASGIDYSQAYQKAERAYIQGNYQDAAAVIDALAEEYPEDPSVLLLRGHIYCYGLQQYEVASEQYSNVLACTSDSEFVDY
ATTGLDYVSQFLGSAGPPTFDPESIDKTFFDGGENPAFDTLNSSNNGADNWDDDLDLDAFSVDADEATGLMGGTLAEGTA
NPFAPLDGGGDTVPDGLKGNPFLAPDADADLAQNGEMSPFGLSNQDPFADADQNLTFDADMGTLATGGGSVFVSFDDEHD
VEESWPAMADDGSDDMTVFAPDGALGGDDFSDEDFGSGMDAEDAFSRNGFGTTPTLDRDDGATGNVDFLDEFSEFDDLGS
LPDFELSDSSAGFSPPSVGSTGFGSMGSGSDFSGGVSAFDLSGSADQTSISDDEIFSIAGGADSLPVFAQADDAEVEAPQ
DQDWLGFLDNAPLPTKNLIIAATAGVAAALSVGVVNAIASSMMPSRDMPKVVHAVMALGAGATGFGAAYGAGYLSQRRMR
ESIRDLQSQFDSVIHQGNLSARATVLSEDEFGRLSSSFNKMARVVLTTTSEAQRKAQEQEQAKEDLQRQVIRLLDDVEGA
ARGDLTVQAEVTADVLGAVADSFNLTIQNLREIVQQVSVAARQVSKGSTENEIFARSLSADALRQAEELAVTLNSVQVMT
DSIQRVAESAREAEEVARSASSTALKGGESVERTVAGILEIRETVAETTRKVKRLAESSQEISKIVALISNIASRTNLLA
LNASIEAARAGEAGRGFAIVADEVRQLADRAAKASKEIEQIVLQIQSETGGVMTAMEEGTQQVIEGTRLAEQAKRSLEDI
IQVSNRIDVLVRSITADTVEQTETSRAVAQVMQSVELTAQETSQEAQRVSGSLQNLVGVARDLLTSVERFKVEKREG

Nucleotide


Download         Length: 2634 bp        

>NTDB_id=401699 GFS31_RS00050 WP_198806306.1 11249..13882(+) (pilJ) [Leptolyngbya sp. BL0902]
ATGGCTTCAGGCATTGATTACTCTCAAGCTTATCAAAAAGCTGAGAGGGCCTATATCCAGGGCAACTATCAGGATGCCGC
AGCCGTTATCGACGCGCTGGCGGAGGAATATCCTGAGGATCCAAGCGTGCTGCTGCTGCGCGGGCATATCTACTGCTATG
GGCTGCAACAGTATGAAGTTGCCAGCGAGCAGTATAGCAATGTCTTGGCCTGCACCTCCGACTCGGAGTTCGTCGATTAC
GCCACCACCGGACTCGACTATGTCAGCCAGTTTTTGGGCAGTGCTGGCCCGCCGACCTTTGACCCGGAGTCCATCGACAA
AACCTTCTTCGATGGTGGGGAGAATCCTGCCTTTGATACCCTCAACTCCTCCAATAATGGGGCCGACAACTGGGATGACG
ACCTCGACCTCGACGCCTTCTCCGTGGATGCCGATGAGGCCACGGGGCTGATGGGGGGGACGCTGGCGGAGGGCACGGCC
AATCCCTTTGCGCCCTTGGATGGCGGCGGTGATACTGTTCCCGATGGCCTGAAGGGAAATCCCTTCTTAGCCCCTGACGC
TGACGCTGACCTGGCCCAGAATGGAGAGATGAGCCCCTTTGGTCTCAGTAACCAAGATCCCTTTGCCGACGCCGACCAGA
ATCTCACCTTTGATGCCGACATGGGCACCCTGGCCACGGGCGGCGGATCGGTCTTTGTTAGCTTTGACGATGAGCATGAT
GTCGAGGAATCTTGGCCTGCCATGGCCGACGACGGCAGCGACGACATGACGGTTTTTGCCCCCGATGGAGCTCTCGGTGG
AGACGACTTTAGCGACGAGGACTTTGGCAGTGGGATGGACGCTGAGGACGCCTTTAGCCGCAATGGCTTTGGCACAACGC
CAACCCTAGATCGCGATGATGGGGCCACGGGCAACGTGGATTTCCTCGATGAGTTTAGTGAGTTTGACGATCTGGGTAGT
CTGCCAGACTTTGAGCTCTCCGATAGTTCCGCTGGGTTTAGCCCTCCGTCCGTCGGCAGCACGGGCTTTGGCTCCATGGG
CAGTGGATCGGACTTTAGCGGCGGCGTGTCGGCCTTTGATCTGAGCGGATCCGCCGATCAAACCTCCATCAGCGACGACG
AAATTTTTAGCATTGCCGGGGGGGCAGACAGTCTGCCCGTCTTTGCCCAGGCCGACGATGCGGAGGTGGAAGCTCCCCAG
GACCAAGACTGGCTAGGGTTCTTAGACAATGCCCCCCTACCCACCAAAAACCTCATCATTGCGGCAACCGCCGGGGTGGC
GGCGGCCCTGTCGGTGGGGGTGGTCAACGCCATTGCCTCCAGCATGATGCCCAGCCGCGATATGCCGAAGGTGGTGCATG
CGGTCATGGCTCTGGGGGCAGGGGCCACAGGGTTTGGAGCCGCCTATGGGGCTGGCTACCTCTCCCAGCGGCGGATGCGG
GAGAGCATTCGCGATCTCCAGAGTCAGTTTGACTCGGTGATTCACCAGGGCAACCTGTCGGCGCGGGCCACGGTGCTGTC
GGAGGATGAGTTTGGGCGGCTATCTAGCAGCTTTAACAAAATGGCCCGCGTGGTGCTGACCACCACCAGCGAAGCCCAGC
GCAAAGCCCAGGAACAGGAGCAGGCCAAGGAAGACCTGCAACGCCAGGTGATTCGGCTGCTGGACGACGTGGAAGGGGCG
GCCCGAGGCGACCTCACGGTGCAGGCGGAAGTAACCGCCGACGTGCTGGGGGCCGTGGCCGACTCCTTCAACCTCACCAT
CCAAAACCTGCGGGAAATTGTGCAGCAGGTGAGTGTGGCCGCCCGCCAGGTGAGTAAGGGATCGACGGAGAACGAGATTT
TCGCCCGCAGCCTGTCGGCGGACGCCCTGCGCCAAGCGGAGGAACTGGCCGTCACCCTAAACTCGGTGCAGGTGATGACC
GACTCGATTCAGCGGGTGGCGGAAAGCGCTCGCGAGGCCGAGGAAGTGGCCCGGTCGGCATCGTCCACCGCCCTCAAGGG
GGGTGAATCGGTGGAACGTACCGTGGCGGGGATTTTAGAAATCCGCGAAACGGTGGCGGAAACCACCCGCAAGGTGAAGC
GGCTGGCGGAATCCTCCCAGGAAATTTCTAAGATTGTGGCCCTGATTTCCAACATTGCCTCCCGCACGAACCTCCTGGCC
CTCAACGCCAGTATTGAGGCGGCTAGGGCCGGAGAAGCAGGGCGGGGCTTCGCCATTGTGGCCGATGAGGTGCGACAACT
GGCCGACCGGGCGGCGAAAGCCTCGAAGGAAATTGAGCAGATCGTGCTGCAAATTCAAAGCGAGACGGGCGGCGTGATGA
CCGCCATGGAGGAGGGTACCCAACAGGTAATTGAGGGCACCCGACTGGCGGAACAGGCGAAACGATCCCTGGAGGACATC
ATTCAGGTGTCGAACCGCATCGACGTGCTGGTGCGATCCATTACCGCCGACACCGTGGAGCAAACGGAAACCTCCCGCGC
CGTGGCCCAGGTGATGCAATCGGTGGAACTGACGGCCCAGGAAACCTCCCAGGAGGCGCAGCGGGTGTCAGGATCGCTCC
AAAACCTGGTGGGGGTGGCCCGCGATCTGCTGACTTCGGTGGAACGGTTTAAGGTGGAAAAACGCGAAGGGTGA

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(655-835)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T5DZR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

46.71

100

0.494

Multiple sequence alignment