Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GKC13_RS02850 Genome accession   NZ_CP046134
Coordinates   536657..538150 (+) Length   497 a.a.
NCBI ID   WP_064355564.1    Uniprot ID   A0A2X3UVI7
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 531657..543150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS02820 (GKC13_02830) - 532199..532559 (+) 361 Protein_551 TatD family hydrolase -
  GKC13_RS10465 amiF 532581..532652 (+) 72 WP_340139154.1 hypothetical protein Regulator
  GKC13_RS10470 (GKC13_02840) amiF 532787..532957 (+) 171 WP_014608546.1 hypothetical protein Regulator
  GKC13_RS02835 (GKC13_02845) - 532948..533132 (+) 185 Protein_554 IS3 family transposase -
  GKC13_RS02845 (GKC13_02855) amiA3 534623..536596 (+) 1974 WP_101415657.1 peptide ABC transporter substrate-binding protein Regulator
  GKC13_RS02850 (GKC13_02860) amiC 536657..538150 (+) 1494 WP_064355564.1 ABC transporter permease Regulator
  GKC13_RS02855 (GKC13_02865) amiD 538150..539076 (+) 927 WP_064355560.1 oligopeptide ABC transporter permease OppC Regulator
  GKC13_RS02860 (GKC13_02870) amiE 539086..540171 (+) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  GKC13_RS02865 (GKC13_02875) amiF 540164..541093 (+) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  GKC13_RS02870 (GKC13_02880) - 541143..541928 (-) 786 WP_207559818.1 ABC transporter permease -
  GKC13_RS02875 (GKC13_02885) - 541940..542638 (-) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  GKC13_RS02880 (GKC13_02890) - 542643..543020 (-) 378 WP_011226300.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55866.73 Da        Isoelectric Point: 10.0536

>NTDB_id=401507 GKC13_RS02850 WP_064355564.1 536657..538150(+) (amiC) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKINYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGFPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=401507 GKC13_RS02850 WP_064355564.1 536657..538150(+) (amiC) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGAAAAGATATATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
TAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCGGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAGTCGTTATCAGTACCCATCAATGGTGACAAGCTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGCGTCTTG
ACTTTCTTGCTTTCGCTACCGACGATTGCCTTGGTATATATCATTCGCTTGATTGGTTCTGAGATTGGTCTTCCGGATTC
TTTTCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCTAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGTTCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATTTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3UVI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

96.579

100

0.966
  amiC Streptococcus thermophilus LMG 18311

96.579

100

0.966
  amiC Streptococcus salivarius strain HSISS4

95.976

100

0.96

Multiple sequence alignment