Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   GKC13_RS10470 Genome accession   NZ_CP046134
Coordinates   532787..532957 (+) Length   56 a.a.
NCBI ID   WP_014608546.1    Uniprot ID   A0A2U2MH52
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 529079..534317 532787..532957 within 0


Gene organization within MGE regions


Location: 529079..534317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS02810 (GKC13_02820) - 529079..530431 (+) 1353 Protein_549 IS3 family transposase -
  GKC13_RS02815 (GKC13_02825) - 530478..531683 (-) 1206 WP_011681420.1 OFA family MFS transporter -
  GKC13_RS02820 (GKC13_02830) - 532199..532559 (+) 361 Protein_551 TatD family hydrolase -
  GKC13_RS10465 amiF 532581..532652 (+) 72 WP_340139154.1 hypothetical protein Regulator
  GKC13_RS10470 (GKC13_02840) amiF 532787..532957 (+) 171 WP_014608546.1 hypothetical protein Regulator
  GKC13_RS02835 (GKC13_02845) - 532948..533132 (+) 185 Protein_554 IS3 family transposase -

Sequence

Protein


Download         Length: 56 a.a.        Molecular weight: 6495.42 Da        Isoelectric Point: 4.6436

>NTDB_id=401547 GKC13_RS10470 WP_014608546.1 532787..532957(+) (amiF) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MEVAETEELYNNPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMV

Nucleotide


Download         Length: 171 bp        

>NTDB_id=401547 GKC13_RS10470 WP_014608546.1 532787..532957(+) (amiF) [Streptococcus thermophilus strain MAG_rmk202_sterm]
GTGGAAGTTGCTGAGACAGAAGAGCTCTACAACAATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTAT
TCCAGATCCAATCTTGGAACGTAAGAAAGTCTTGAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAG
AAATGGTATGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(1-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U2MH52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

98.214

100

0.982
  amiF Streptococcus thermophilus LMD-9

98.214

100

0.982
  amiF Streptococcus salivarius strain HSISS4

98.214

100

0.982

Multiple sequence alignment