Detailed information NTG0401508

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: GKC13_RS02855
• Genome accession: NZ_CP046134
• Coordinates: 538150..539076 (+)
• Length: 308 a.a.
• NCBI ID: WP_064355560.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain MAG_rmk202_sterm
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 533150..544076

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GKC13_RS02845 (GKC13_02855)	amiA3	534623..536596 (+)	1974	WP_101415657.1	peptide ABC transporter substrate-binding protein	Regulator
GKC13_RS02850 (GKC13_02860)	amiC	536657..538150 (+)	1494	WP_064355564.1	ABC transporter permease	Regulator
GKC13_RS02855 (GKC13_02865)	amiD	538150..539076 (+)	927	WP_064355560.1	oligopeptide ABC transporter permease OppC	Regulator
GKC13_RS02860 (GKC13_02870)	amiE	539086..540171 (+)	1086	WP_011226304.1	ABC transporter ATP-binding protein	Regulator
GKC13_RS02865 (GKC13_02875)	amiF	540164..541093 (+)	930	WP_011681415.1	ATP-binding cassette domain-containing protein	Regulator
GKC13_RS02870 (GKC13_02880)	-	541143..541928 (-)	786	WP_207559818.1	ABC transporter permease	-
GKC13_RS02875 (GKC13_02885)	-	541940..542638 (-)	699	WP_011226301.1	ABC transporter ATP-binding protein	-
GKC13_RS02880 (GKC13_02890)	-	542643..543020 (-)	378	WP_011226300.1	GntR family transcriptional regulator	-
GKC13_RS02885 (GKC13_02895)	-	543204..543998 (+)	795	WP_084829753.1	HAD family hydrolase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34650.80 Da
• Isoelectric Point: 9.7054

>NTDB_id=401508 GKC13_RS02855 WP_064355560.1 538150..539076(+) (amiD) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=401508 GKC13_RS02855 WP_064355560.1 538150..539076(+) (amiD) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTGCTATTG
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTTTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATTGGTATTGCCTACAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATTATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGATTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	99.351	100	0.994
amiD	Streptococcus thermophilus LMD-9	99.351	100	0.994
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964