Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | GGC04_RS04775 | Genome accession | NZ_CP046065 |
| Coordinates | 1044818..1045117 (+) | Length | 99 a.a. |
| NCBI ID | WP_019277884.1 | Uniprot ID | A0A1V0I6C0 |
| Organism | Vibrio sp. THAF191d | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1039818..1050117
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GGC04_RS04760 (GGC04_04810) | lon | 1039829..1042180 (+) | 2352 | WP_021457152.1 | endopeptidase La | - |
| GGC04_RS04765 (GGC04_04815) | - | 1042373..1042645 (+) | 273 | WP_004414742.1 | HU family DNA-binding protein | - |
| GGC04_RS04770 (GGC04_04820) | ppiD | 1042819..1044678 (+) | 1860 | WP_006959344.1 | peptidylprolyl isomerase | - |
| GGC04_RS04775 (GGC04_04825) | comEA | 1044818..1045117 (+) | 300 | WP_019277884.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| GGC04_RS04780 (GGC04_04830) | cmk | 1045258..1045938 (+) | 681 | WP_006959340.1 | (d)CMP kinase | - |
| GGC04_RS04785 (GGC04_04835) | rpsA | 1046042..1047712 (+) | 1671 | WP_006959338.1 | 30S ribosomal protein S1 | - |
| GGC04_RS04790 (GGC04_04840) | ihfB | 1047923..1048204 (+) | 282 | WP_006959336.1 | integration host factor subunit beta | - |
| GGC04_RS04795 (GGC04_04845) | - | 1048343..1048624 (+) | 282 | WP_006959333.1 | LapA family protein | - |
| GGC04_RS04800 (GGC04_04850) | lapB | 1048650..1049819 (+) | 1170 | WP_006959331.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10588.39 Da Isoelectric Point: 6.2913
>NTDB_id=400850 GGC04_RS04775 WP_019277884.1 1044818..1045117(+) (comEA) [Vibrio sp. THAF191d]
MLRILWTSLLMVLAVYSPTTVSAEKTTNSEYAGIEITVNVNTAEAAELAALLTGVGAKKAEAIVQYRDENGPFLKVTDLA
LVKGIGPALIDKNLSRIKL
MLRILWTSLLMVLAVYSPTTVSAEKTTNSEYAGIEITVNVNTAEAAELAALLTGVGAKKAEAIVQYRDENGPFLKVTDLA
LVKGIGPALIDKNLSRIKL
Nucleotide
Download Length: 300 bp
>NTDB_id=400850 GGC04_RS04775 WP_019277884.1 1044818..1045117(+) (comEA) [Vibrio sp. THAF191d]
ATGCTACGCATACTTTGGACGAGTCTTTTAATGGTGCTCGCGGTATATAGCCCAACTACTGTATCGGCTGAAAAAACCAC
CAACTCAGAATACGCTGGAATAGAGATTACAGTGAATGTTAATACGGCTGAAGCGGCTGAATTAGCGGCGCTACTAACTG
GTGTTGGTGCGAAAAAAGCTGAGGCTATTGTTCAATATAGGGACGAAAACGGTCCCTTTTTGAAGGTGACTGATTTGGCT
TTGGTTAAAGGTATTGGCCCCGCTTTAATAGACAAAAACCTCAGTCGTATAAAGTTGTAA
ATGCTACGCATACTTTGGACGAGTCTTTTAATGGTGCTCGCGGTATATAGCCCAACTACTGTATCGGCTGAAAAAACCAC
CAACTCAGAATACGCTGGAATAGAGATTACAGTGAATGTTAATACGGCTGAAGCGGCTGAATTAGCGGCGCTACTAACTG
GTGTTGGTGCGAAAAAAGCTGAGGCTATTGTTCAATATAGGGACGAAAACGGTCCCTTTTTGAAGGTGACTGATTTGGCT
TTGGTTAAAGGTATTGGCCCCGCTTTAATAGACAAAAACCTCAGTCGTATAAAGTTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
52.747 |
91.919 |
0.485 |
| comEA | Vibrio campbellii strain DS40M4 |
51.648 |
91.919 |
0.475 |
| comEA | Vibrio cholerae C6706 |
53.571 |
84.848 |
0.455 |
| comEA | Vibrio cholerae strain A1552 |
53.571 |
84.848 |
0.455 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
39.091 |
100 |
0.434 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
38.679 |
100 |
0.414 |