Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GJ672_RS08195 Genome accession   NZ_CP046046
Coordinates   1651304..1651759 (-) Length   151 a.a.
NCBI ID   WP_154296726.1    Uniprot ID   A0A6B8JR21
Organism   Spiribacter sp. 2438     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1646304..1656759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJ672_RS08180 (GJ672_08180) deoD 1647207..1647920 (-) 714 WP_154296723.1 purine-nucleoside phosphorylase -
  GJ672_RS08185 (GJ672_08185) - 1648059..1648658 (+) 600 WP_154296724.1 HAD-IB family hydrolase -
  GJ672_RS08190 (GJ672_08190) - 1648660..1651296 (+) 2637 WP_154296725.1 AMP-binding protein -
  GJ672_RS08195 (GJ672_08195) ssb 1651304..1651759 (-) 456 WP_154296726.1 single-stranded DNA-binding protein Machinery gene
  GJ672_RS08200 (GJ672_08200) - 1651864..1653588 (-) 1725 WP_154296727.1 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase -
  GJ672_RS08205 (GJ672_08205) - 1653585..1654787 (-) 1203 WP_154296728.1 MFS transporter -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16521.18 Da        Isoelectric Point: 4.7055

>NTDB_id=400671 GJ672_RS08195 WP_154296726.1 1651304..1651759(-) (ssb) [Spiribacter sp. 2438]
MARGVNKVILVGNLGADPEVRYAASGSAVTNARLATTDQWKDRQTGEQQERTEWHRLVFFSRLAEIAGEYLKKGSKVYVE
GRLQTRKWQGQDGQDRFTTEVVVNDMQMLDGPGGMGGGDRGGSARREQPPAASESSGETAPADDFDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=400671 GJ672_RS08195 WP_154296726.1 1651304..1651759(-) (ssb) [Spiribacter sp. 2438]
ATGGCAAGGGGCGTAAACAAAGTCATTCTGGTGGGCAATCTCGGCGCGGATCCCGAAGTGCGCTATGCCGCGTCCGGCAG
TGCGGTGACCAACGCGCGGCTGGCGACCACCGATCAGTGGAAAGATCGCCAGACCGGTGAGCAGCAGGAGCGCACCGAAT
GGCATCGGCTGGTGTTTTTCAGCCGGCTGGCGGAAATTGCCGGCGAGTATCTGAAAAAAGGCTCCAAGGTGTACGTCGAG
GGACGCCTCCAGACCCGCAAATGGCAAGGCCAAGATGGCCAGGATCGCTTCACCACCGAGGTGGTGGTGAATGACATGCA
GATGCTGGACGGCCCTGGCGGCATGGGTGGCGGTGATCGTGGCGGCAGCGCTCGACGCGAGCAACCGCCGGCGGCGTCAG
AGTCATCCGGCGAGACCGCGCCAGCGGATGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B8JR21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.571

100

0.609
  ssb Glaesserella parasuis strain SC1401

48.603

100

0.576
  ssb Neisseria meningitidis MC58

44.509

100

0.51
  ssb Neisseria gonorrhoeae MS11

43.931

100

0.503
  ssb Latilactobacillus sakei subsp. sakei 23K

31.977

100

0.364

Multiple sequence alignment