Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   GJS33_RS10005 Genome accession   NZ_CP046041
Coordinates   531398..531994 (+) Length   198 a.a.
NCBI ID   WP_269206546.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain AZ-45470     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 526398..536994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS33_RS02545 (GJS33_02545) - 526996..527889 (+) 894 WP_012678373.1 helix-turn-helix domain-containing protein -
  GJS33_RS02550 (GJS33_02550) - 528242..528382 (+) 141 WP_012515166.1 hypothetical protein -
  GJS33_RS02555 (GJS33_02555) - 528495..528653 (+) 159 WP_021320463.1 hypothetical protein -
  GJS33_RS02560 (GJS33_02560) - 528667..528813 (+) 147 WP_021320464.1 hypothetical protein -
  GJS33_RS02565 (GJS33_02565) - 528836..529003 (+) 168 WP_012515168.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  GJS33_RS02570 (GJS33_02570) comA 529230..531383 (+) 2154 WP_012515169.1 peptide cleavage/export ABC transporter ComA Regulator
  GJS33_RS10005 comB 531398..531994 (+) 597 WP_269206546.1 hypothetical protein Regulator
  GJS33_RS10010 - 532004..532765 (+) 762 WP_282884772.1 HlyD family efflux transporter periplasmic adaptor subunit -
  GJS33_RS02580 (GJS33_02580) - 533274..533510 (+) 237 WP_024273149.1 hypothetical protein -
  GJS33_RS02585 (GJS33_02585) nrdF 533968..534981 (+) 1014 WP_043040212.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  GJS33_RS02590 (GJS33_02590) nrdI 534983..535390 (+) 408 WP_043025398.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22598.26 Da        Isoelectric Point: 4.9758

>NTDB_id=400557 GJS33_RS10005 WP_269206546.1 531398..531994(+) (comB) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
MNNNILESAEFYNRRYHNFSSRVILPTLLLFLFGVFFLAFAKKEISIISTATVEPNIILSNIQSTSNNTILTNNLKDNKY
VKFGDLLIKYDSRKEGIQQETYQTQLNNLQIQKEQLELLKASIEAGNSQFPEKDNYGYYQTFIDYLNQINTLSANVNQQN
ENVSSQNTAASNQQVEIENAIKGLTSQISDYQSVRSAI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=400557 GJS33_RS10005 WP_269206546.1 531398..531994(+) (comB) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
ATGAATAACAATATATTAGAAAGTGCGGAATTTTATAACCGTCGTTACCACAACTTTTCTAGTCGTGTCATTCTACCTAC
TTTGCTGCTTTTCTTGTTTGGTGTTTTCTTCCTAGCATTTGCAAAGAAAGAAATTTCTATTATTTCAACTGCAACAGTTG
AACCAAATATAATTCTTTCCAATATTCAATCTACAAGTAATAATACAATATTAACCAATAATCTAAAAGATAATAAATAT
GTCAAATTTGGAGACTTATTGATAAAATATGATTCAAGAAAAGAAGGTATTCAACAAGAGACCTATCAAACTCAATTAAA
TAATTTACAAATCCAAAAAGAACAGTTAGAGCTATTAAAAGCAAGTATTGAAGCTGGAAACAGTCAATTTCCAGAAAAAG
ATAATTATGGATATTATCAAACATTTATTGACTACTTAAATCAGATAAACACTTTATCAGCCAATGTAAATCAGCAAAAT
GAAAATGTCTCTTCACAAAATACTGCAGCTAGCAATCAGCAAGTAGAAATTGAGAATGCCATCAAAGGTCTCACAAGTCA
AATTTCAGATTATCAATCTGTTCGCTCGGCGATTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus mitis SK321

54.04

100

0.54
  comB Streptococcus pneumoniae TIGR4

54.04

100

0.54
  comB Streptococcus pneumoniae Rx1

54.04

100

0.54
  comB Streptococcus pneumoniae D39

54.04

100

0.54
  comB Streptococcus pneumoniae R6

54.04

100

0.54
  comB Streptococcus mitis NCTC 12261

53.03

100

0.53
  comB Streptococcus gordonii str. Challis substr. CH1

48.485

100

0.485

Multiple sequence alignment