Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   GJS33_RS00720 Genome accession   NZ_CP046041
Coordinates   127492..128526 (+) Length   344 a.a.
NCBI ID   WP_228269172.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain AZ-45470     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 122492..133526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS33_RS00700 (GJS33_00700) - 123532..123723 (+) 192 Protein_107 lactococcin 972 family bacteriocin -
  GJS33_RS00705 (GJS33_00705) - 123788..125791 (+) 2004 WP_111692093.1 DUF1430 domain-containing protein -
  GJS33_RS00710 (GJS33_00710) - 125793..126440 (+) 648 WP_111692094.1 ABC transporter ATP-binding protein -
  GJS33_RS00715 (GJS33_00715) comGA/cglA 126621..127559 (+) 939 WP_111692095.1 competence type IV pilus ATPase ComGA Machinery gene
  GJS33_RS00720 (GJS33_00720) comYB 127492..128526 (+) 1035 WP_228269172.1 competence type IV pilus assembly protein ComGB Machinery gene
  GJS33_RS00725 (GJS33_00725) comGC/cglC 128527..128850 (+) 324 WP_012514782.1 competence type IV pilus major pilin ComGC Machinery gene
  GJS33_RS00730 (GJS33_00730) comGD 128828..129253 (+) 426 WP_111692097.1 competence type IV pilus minor pilin ComGD -
  GJS33_RS00735 (GJS33_00735) comGE 129258..129500 (+) 243 WP_012677236.1 competence type IV pilus minor pilin ComGE -
  GJS33_RS00740 (GJS33_00740) comYF 129487..129921 (+) 435 WP_037580631.1 competence type IV pilus minor pilin ComGF Machinery gene
  GJS33_RS00745 (GJS33_00745) comGG 129899..130261 (+) 363 WP_111692098.1 competence type IV pilus minor pilin ComGG -
  GJS33_RS00750 (GJS33_00750) - 130329..131671 (+) 1343 WP_195759329.1 IS3 family transposase -
  GJS33_RS00755 (GJS33_00755) comYH 131755..132708 (+) 954 WP_154298646.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39568.83 Da        Isoelectric Point: 9.4455

>NTDB_id=400502 GJS33_RS00720 WP_228269172.1 127492..128526(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
MISFLRRDISIPGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLVFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLLLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWSNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVSAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQHMGDVF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=400502 GJS33_RS00720 WP_228269172.1 127492..128526(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
TTGATCAGCTTCTTGCGGAGGGACATCTCAATACCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTG
GGCTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTGGTTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGTTTTTGTTTGCTTTTGCTTTTGCTAATTGGCTCTTTTTACCTATATGCCAGATCTTG
TAGTCGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGGGAATGGAGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTGGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAGTCCTTTCATCAAAGGGTTTCAGCTTA
TCCCTTTTTTAAAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

53.982

98.547

0.532
  comYB Streptococcus mutans UA159

53.982

98.547

0.532
  comYB Streptococcus gordonii str. Challis substr. CH1

51.176

98.837

0.506
  comGB/cglB Streptococcus mitis NCTC 12261

48.214

97.674

0.471
  comGB/cglB Streptococcus mitis SK321

48.048

96.802

0.465
  comGB/cglB Streptococcus pneumoniae Rx1

47.447

96.802

0.459
  comGB/cglB Streptococcus pneumoniae D39

47.447

96.802

0.459
  comGB/cglB Streptococcus pneumoniae R6

47.447

96.802

0.459
  comGB/cglB Streptococcus pneumoniae TIGR4

47.447

96.802

0.459
  comGB Lactococcus lactis subsp. cremoris KW2

46.933

94.767

0.445

Multiple sequence alignment