Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HUF09_RS26540 Genome accession   NZ_CP054623
Coordinates   5650279..5650704 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain DL201330     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5645279..5655704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF09_RS26520 (HUF09_26535) ileS 5645436..5648267 (+) 2832 WP_004352756.1 isoleucine--tRNA ligase -
  HUF09_RS26525 (HUF09_26540) lspA 5648260..5648769 (+) 510 WP_003102615.1 signal peptidase II -
  HUF09_RS26530 (HUF09_26545) fkpB 5648762..5649202 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  HUF09_RS26535 (HUF09_26550) ispH 5649288..5650232 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HUF09_RS26540 (HUF09_26555) comF 5650279..5650704 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  HUF09_RS26545 (HUF09_26560) pilY2 5650701..5651048 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  HUF09_RS26550 (HUF09_26565) pilY1 5651050..5654541 (-) 3492 WP_015648053.1 type 4a pilus biogenesis protein PilY1 -
  HUF09_RS26555 (HUF09_26570) pilX 5654553..5655140 (-) 588 WP_015648054.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=400503 HUF09_RS26540 WP_003094721.1 5650279..5650704(-) (comF) [Pseudomonas aeruginosa strain DL201330]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=400503 HUF09_RS26540 WP_003094721.1 5650279..5650704(-) (comF) [Pseudomonas aeruginosa strain DL201330]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383

Multiple sequence alignment