Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   GJV52_RS09585 Genome accession   NZ_CP046027
Coordinates   1906864..1907151 (+) Length   95 a.a.
NCBI ID   WP_095503827.1    Uniprot ID   -
Organism   Neisseria brasiliensis strain N.177.16     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1901864..1912151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV52_RS09585 (GJV52_09585) comE 1906864..1907151 (+) 288 WP_095503827.1 helix-hairpin-helix domain-containing protein Machinery gene
  GJV52_RS09590 (GJV52_09590) - 1907330..1908081 (+) 752 WP_096121706.1 IS5-like element IS1301 family transposase -
  GJV52_RS09595 (GJV52_09595) comL 1908177..1908980 (-) 804 WP_095501980.1 outer membrane protein assembly factor BamD Machinery gene
  GJV52_RS09600 (GJV52_09600) rluD 1908979..1910103 (+) 1125 WP_095501981.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GJV52_RS09605 (GJV52_09605) pgeF 1910154..1910930 (+) 777 WP_100564086.1 peptidoglycan editing factor PgeF -
  GJV52_RS09610 (GJV52_09610) lptE 1911117..1911596 (+) 480 WP_095501983.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9925.64 Da        Isoelectric Point: 10.6062

>NTDB_id=400325 GJV52_RS09585 WP_095503827.1 1906864..1907151(+) (comE) [Neisseria brasiliensis strain N.177.16]
MKKIIFYALTTLVASVSAAAVNVNTASESELTALPGVGPAKAKAIVEYRKQHGSFKTLDELKNVKGIGEGIFSKLKNEAT
VAAPAKKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=400325 GJV52_RS09585 WP_095503827.1 1906864..1907151(+) (comE) [Neisseria brasiliensis strain N.177.16]
ATGAAGAAAATCATCTTCTACGCACTGACCACTTTAGTTGCTTCTGTCTCTGCTGCCGCAGTGAATGTCAACACCGCCTC
CGAAAGCGAACTGACGGCACTGCCGGGTGTAGGCCCTGCCAAAGCCAAAGCGATTGTAGAGTATCGCAAACAGCATGGTA
GCTTTAAGACCTTGGACGAACTGAAAAACGTCAAAGGCATTGGTGAAGGAATCTTCTCGAAATTAAAGAATGAAGCCACT
GTCGCTGCGCCGGCTAAGAAAGCTGCTCAGCCTGCTGTTAAGAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

53.535

100

0.558
  comE Neisseria gonorrhoeae MS11

53.535

100

0.558
  comE Neisseria gonorrhoeae MS11

53.535

100

0.558
  comE Neisseria gonorrhoeae MS11

53.535

100

0.558
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.602

87.368

0.442
  comEA Staphylococcus aureus N315

60.656

64.211

0.389
  comEA Staphylococcus aureus MW2

60.656

64.211

0.389

Multiple sequence alignment