Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   GJV52_RS09595 Genome accession   NZ_CP046027
Coordinates   1908177..1908980 (-) Length   267 a.a.
NCBI ID   WP_095501980.1    Uniprot ID   -
Organism   Neisseria brasiliensis strain N.177.16     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1903177..1913980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV52_RS09585 (GJV52_09585) comE 1906864..1907151 (+) 288 WP_095503827.1 helix-hairpin-helix domain-containing protein Machinery gene
  GJV52_RS09590 (GJV52_09590) - 1907330..1908081 (+) 752 WP_096121706.1 IS5-like element IS1301 family transposase -
  GJV52_RS09595 (GJV52_09595) comL 1908177..1908980 (-) 804 WP_095501980.1 outer membrane protein assembly factor BamD Machinery gene
  GJV52_RS09600 (GJV52_09600) rluD 1908979..1910103 (+) 1125 WP_095501981.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GJV52_RS09605 (GJV52_09605) pgeF 1910154..1910930 (+) 777 WP_100564086.1 peptidoglycan editing factor PgeF -
  GJV52_RS09610 (GJV52_09610) lptE 1911117..1911596 (+) 480 WP_095501983.1 LPS assembly lipoprotein LptE -
  GJV52_RS09615 (GJV52_09615) holA 1911597..1912598 (+) 1002 WP_100564083.1 DNA polymerase III subunit delta -
  GJV52_RS09620 (GJV52_09620) - 1912750..1913169 (+) 420 WP_095501985.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31224.25 Da        Isoelectric Point: 7.9862

>NTDB_id=400326 GJV52_RS09595 WP_095501980.1 1908177..1908980(-) (comL) [Neisseria brasiliensis strain N.177.16]
MKKILLLVSLSLALSACANKGTIDKDAQITQDWSVEQLYAEAQDELNSNNYTRAIKLYELLESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIDRFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYHAFAQLVERYPNS
KYAPDATARMTKLVDALGGNEIAVARYYMKRGAYLAAINRAQKIVQQYQNTRYVEESLAMMELAYKKLEKPQLAQDTRRI
LQQNFPESPFLTHEWRNGDMPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=400326 GJV52_RS09595 WP_095501980.1 1908177..1908980(-) (comL) [Neisseria brasiliensis strain N.177.16]
ATGAAAAAAATTCTTTTATTAGTTTCTTTAAGTTTGGCGCTCAGCGCATGTGCCAATAAAGGCACCATCGATAAAGACGC
TCAAATTACTCAGGATTGGAGTGTGGAACAGCTTTATGCTGAAGCACAGGATGAATTGAACAGCAACAATTATACGCGAG
CCATCAAGTTATATGAACTGCTGGAATCACGTTTCCCTAATGGCCGCTACGCGCAGCAATCGCAATTGGATACGGCCTAC
GCATACTATAAAGACGACGAACCGGAAAAAGCCTTGGCCGCTATCGACCGCTTCCAGCGCCATCACCCGCAACATCCGAA
CATGGATTATGCCTTATATTTAAAAGGCTTGGTATTGTTTAATGAAGATCAGTCTTTCTTAAATAAATTAGCCTCGCAAG
ACTGGTCCGACCGTGACCCTAAAGCCAACCGCGATGCCTATCATGCTTTTGCCCAATTGGTAGAACGCTACCCGAACAGT
AAATATGCACCGGATGCCACAGCACGCATGACTAAATTGGTTGATGCATTGGGCGGTAACGAAATTGCTGTTGCCCGATA
CTACATGAAGCGAGGCGCATACCTTGCAGCCATTAACCGCGCGCAAAAAATCGTTCAGCAGTATCAAAACACACGTTACG
TCGAAGAATCATTAGCCATGATGGAACTGGCTTATAAAAAACTGGAAAAACCGCAATTGGCTCAAGATACCCGCCGTATT
TTGCAACAGAACTTTCCAGAAAGTCCGTTCTTAACCCATGAATGGCGCAATGGCGATATGCCTTGGTGGCGTTATTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

83.083

99.625

0.828
  comL Neisseria gonorrhoeae MS11

82.707

99.625

0.824

Multiple sequence alignment