Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPE41_RS22600 Genome accession   NZ_CP054371
Coordinates   4785099..4786619 (-) Length   506 a.a.
NCBI ID   WP_000058986.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-316     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4780099..4791619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE41_RS22590 (HPE41_22595) hdfR 4783778..4784617 (-) 840 WP_000379246.1 HTH-type transcriptional regulator HdfR -
  HPE41_RS22595 (HPE41_22600) maoP 4784736..4785074 (+) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  HPE41_RS22600 (HPE41_22605) comM 4785099..4786619 (-) 1521 WP_000058986.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPE41_RS22605 (HPE41_22610) ilvL 4786972..4787070 (+) 99 WP_001311244.1 ilv operon leader peptide -
  HPE41_RS22610 (HPE41_22615) ilvX 4787157..4787207 (+) 51 WP_001387183.1 peptide IlvX -
  HPE41_RS22615 (HPE41_22620) ilvG 4787210..4788856 (+) 1647 WP_001012619.1 acetolactate synthase 2 catalytic subunit -
  HPE41_RS22620 (HPE41_22625) ilvM 4788853..4789116 (+) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  HPE41_RS22625 (HPE41_22630) ilvE 4789136..4790065 (+) 930 WP_000208520.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55180.39 Da        Isoelectric Point: 7.6191

>NTDB_id=399249 HPE41_RS22600 WP_000058986.1 4785099..4786619(-) (comM) [Escherichia coli strain SCU-316]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHTLERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPG
ESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEGTLIHLGLSIRAWQRLLKVARTIADIEQSDVI
TRQHLQEAVSYRAMDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=399249 HPE41_RS22600 WP_000058986.1 4785099..4786619(-) (comM) [Escherichia coli strain SCU-316]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTTTGCCCGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATTAACCTTGCTCCAGCCGATCTACCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
CGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGCGCAATCTCCAGTGCAACTGAAGCTATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCGTTTCTGGAAGGTAAGCACACTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGTGGGCACAACCTTT
TACTGATTGGACCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGTCTTTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCTCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCAGGTGAAATTTCGTTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACACGAGCAAAAATAACCTATCCAGCCCGTTTCCAGCTTGTCGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACGCCAGAACAGACATTACGTTATCTCAACCGGCTCTCGGGGC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCATTACCACCCCCCGGCATTTTGAGTAAAACGGTAGTGCCGGGA
GAAAGCAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGTCCGGAAATACGCCAATTCTGCAAACTTGAGAGCGAAGATGCGATGTGGTTGGAAGGAACACTGATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTATTGAAAGTTGCACGAACCATTGCTGATATTGAACAGTCTGACGTCATC
ACACGCCAGCATTTACAGGAGGCAGTTAGCTATCGAGCTATGGATCGCTTGCTTATTCATTTACAAAAACTACTTACATA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.904

100

0.595
  comM Vibrio cholerae O1 biovar El Tor strain E7946

59.761

99.209

0.593
  comM Vibrio cholerae strain A1552

59.761

99.209

0.593
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Vibrio campbellii strain DS40M4

58.566

99.209

0.581
  comM Acinetobacter baylyi ADP1

49.398

98.419

0.486
  comM Legionella pneumophila str. Paris

47.992

98.419

0.472
  comM Legionella pneumophila strain ERS1305867

47.992

98.419

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.466

100

0.445

Multiple sequence alignment