Detailed information
Bioinformatically predicted
Overview
| Name | comGD | Type | Machinery gene |
| Locus tag | GIG89_RS00655 | Genome accession | NZ_CP045924 |
| Coordinates | 135901..136317 (+) | Length | 138 a.a. |
| NCBI ID | WP_019291446.1 | Uniprot ID | - |
| Organism | Lactococcus petauri strain CF11 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 130901..141317
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GIG89_RS00630 | guaB | 131731..133212 (+) | 1482 | WP_003133714.1 | IMP dehydrogenase | - |
| GIG89_RS00635 | rpsU | 133338..133514 (+) | 177 | WP_003134539.1 | 30S ribosomal protein S21 | - |
| GIG89_RS00640 | comGA | 133700..134644 (+) | 945 | WP_019291447.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GIG89_RS00645 | comGB | 134583..135602 (+) | 1020 | WP_255566838.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GIG89_RS00650 | comYC | 135621..135926 (+) | 306 | WP_153924350.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GIG89_RS00655 | comGD | 135901..136317 (+) | 417 | WP_019291446.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GIG89_RS00660 | comGE | 136349..136582 (+) | 234 | WP_019293009.1 | competence type IV pilus minor pilin ComGE | - |
| GIG89_RS00665 | comGF | 136563..137003 (+) | 441 | WP_019291444.1 | competence type IV pilus minor pilin ComGF | - |
| GIG89_RS00670 | - | 137235..138080 (+) | 846 | WP_019291443.1 | zinc ABC transporter substrate-binding protein | - |
| GIG89_RS00675 | - | 138151..139035 (-) | 885 | WP_019291442.1 | RluA family pseudouridine synthase | - |
Sequence
Protein
Download Length: 138 a.a. Molecular weight: 15743.32 Da Isoelectric Point: 9.9391
>NTDB_id=399171 GIG89_RS00655 WP_019291446.1 135901..136317(+) (comGD) [Lactococcus petauri strain CF11]
MQNVMYRIKALTLLESLLVLFLCSSVLFLFSGSAKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGTLYSQ
EEVLKVPEEVEINDFSITFDQKSGNSSLQKITIFLPYQKKNISYQLEIGSGKYKKKIT
MQNVMYRIKALTLLESLLVLFLCSSVLFLFSGSAKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGTLYSQ
EEVLKVPEEVEINDFSITFDQKSGNSSLQKITIFLPYQKKNISYQLEIGSGKYKKKIT
Nucleotide
Download Length: 417 bp
>NTDB_id=399171 GIG89_RS00655 WP_019291446.1 135901..136317(+) (comGD) [Lactococcus petauri strain CF11]
ATGCAAAATGTAATGTATCGAATTAAAGCTTTGACCTTACTAGAGAGTTTACTAGTCCTTTTCCTTTGCTCTTCTGTTCT
TTTTCTCTTTTCAGGTTCGGCCAAACAAAGTGTCAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAGCGACTTT
ATAAGGATACCCAGCGTATGGCAGGATTAAAGGGACAGCAACAGACATTGAGTGCGAGTAATGGCACACTATACAGCCAA
GAGGAAGTGCTGAAAGTTCCAGAGGAGGTTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAACTCGAG
CCTACAAAAAATTACAATATTTCTTCCTTATCAGAAAAAAAACATCTCTTATCAATTGGAAATTGGAAGCGGGAAATATA
AGAAAAAAATCACTTGA
ATGCAAAATGTAATGTATCGAATTAAAGCTTTGACCTTACTAGAGAGTTTACTAGTCCTTTTCCTTTGCTCTTCTGTTCT
TTTTCTCTTTTCAGGTTCGGCCAAACAAAGTGTCAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAGCGACTTT
ATAAGGATACCCAGCGTATGGCAGGATTAAAGGGACAGCAACAGACATTGAGTGCGAGTAATGGCACACTATACAGCCAA
GAGGAAGTGCTGAAAGTTCCAGAGGAGGTTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAACTCGAG
CCTACAAAAAATTACAATATTTCTTCCTTATCAGAAAAAAAACATCTCTTATCAATTGGAAATTGGAAGCGGGAAATATA
AGAAAAAAATCACTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGD | Lactococcus lactis subsp. cremoris KW2 |
48.551 |
100 |
0.486 |
| comYD | Streptococcus mutans UA140 |
42.424 |
95.652 |
0.406 |
| comYD | Streptococcus mutans UA159 |
42.424 |
95.652 |
0.406 |
| comGD/cglD | Streptococcus mitis SK321 |
39.535 |
93.478 |
0.37 |
| comGD/cglD | Streptococcus pneumoniae TIGR4 |
39.535 |
93.478 |
0.37 |
| comGD/cglD | Streptococcus mitis NCTC 12261 |
38.462 |
94.203 |
0.362 |