Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | GH975_RS03285 | Genome accession | NZ_CP045871 |
| Coordinates | 644525..645655 (+) | Length | 376 a.a. |
| NCBI ID | WP_153713145.1 | Uniprot ID | A0A5Q2QBF8 |
| Organism | Litorivicinus lipolyticus strain IMCC 1097 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 639525..650655
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GH975_RS03270 (GH975_03270) | - | 639970..640740 (-) | 771 | WP_153713143.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| GH975_RS03275 (GH975_03275) | - | 640737..641702 (-) | 966 | WP_211365835.1 | LLM class oxidoreductase | - |
| GH975_RS03280 (GH975_03280) | - | 641735..644368 (-) | 2634 | WP_153713144.1 | HAD-IC family P-type ATPase | - |
| GH975_RS03285 (GH975_03285) | pilU | 644525..645655 (+) | 1131 | WP_153713145.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| GH975_RS03290 (GH975_03290) | minC | 645725..646426 (+) | 702 | WP_153713146.1 | septum site-determining protein MinC | - |
| GH975_RS03295 (GH975_03295) | minD | 646504..647316 (+) | 813 | WP_153713147.1 | septum site-determining protein MinD | - |
| GH975_RS03300 (GH975_03300) | minE | 647321..647569 (+) | 249 | WP_153713148.1 | cell division topological specificity factor MinE | - |
| GH975_RS03305 (GH975_03305) | sbcB | 647562..649001 (+) | 1440 | WP_153713149.1 | exodeoxyribonuclease I | - |
| GH975_RS03310 (GH975_03310) | - | 648998..649165 (-) | 168 | WP_153713150.1 | Trm112 family protein | - |
| GH975_RS03315 (GH975_03315) | - | 649194..650021 (+) | 828 | WP_170272522.1 | alpha/beta fold hydrolase | - |
| GH975_RS03320 (GH975_03320) | - | 650094..650603 (+) | 510 | WP_153713152.1 | DUF2244 domain-containing protein | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 40518.21 Da Isoelectric Point: 5.4667
>NTDB_id=398913 GH975_RS03285 WP_153713145.1 644525..645655(+) (pilU) [Litorivicinus lipolyticus strain IMCC 1097]
MTLLTWLRELDTRQGSDLYLSTAAPATVRVNGVMQPIGEPLATGAVAGLLAGVTSAAQKAEFAAKPELNFAVSEPGLGRF
RINAFKQRGEVSIVARAIKTDIPSIASLGLPPLLKQLSMAPRGLILFVGATGSGKSTSLASMVDYRNANAAGHIITIEDP
IEFVHAHKQSVVNQREVGMDTDTYQDALENTLRQAPDVILIGEIRTRETMEHAIAFAETGHLCLSTLHANNANQALDRII
NFFPEERRDQLLMDLSLNLRGIVSQRLVKTVSSARTAAVEILLGTPRVSDLIRQGEVGLLKEAMEQAGTEGMVTFDAALL
ALWKSGAVSLDEALRNADSENNLRLAINLVEQRQADGSDAGWSLTPNQEAPGQRLR
MTLLTWLRELDTRQGSDLYLSTAAPATVRVNGVMQPIGEPLATGAVAGLLAGVTSAAQKAEFAAKPELNFAVSEPGLGRF
RINAFKQRGEVSIVARAIKTDIPSIASLGLPPLLKQLSMAPRGLILFVGATGSGKSTSLASMVDYRNANAAGHIITIEDP
IEFVHAHKQSVVNQREVGMDTDTYQDALENTLRQAPDVILIGEIRTRETMEHAIAFAETGHLCLSTLHANNANQALDRII
NFFPEERRDQLLMDLSLNLRGIVSQRLVKTVSSARTAAVEILLGTPRVSDLIRQGEVGLLKEAMEQAGTEGMVTFDAALL
ALWKSGAVSLDEALRNADSENNLRLAINLVEQRQADGSDAGWSLTPNQEAPGQRLR
Nucleotide
Download Length: 1131 bp
>NTDB_id=398913 GH975_RS03285 WP_153713145.1 644525..645655(+) (pilU) [Litorivicinus lipolyticus strain IMCC 1097]
ATGACATTACTGACTTGGTTACGTGAACTGGACACCCGTCAGGGTTCGGACCTTTACCTGTCGACGGCAGCACCGGCGAC
CGTGCGGGTTAACGGGGTGATGCAGCCGATCGGCGAGCCGCTGGCCACTGGTGCCGTCGCGGGGCTGTTAGCCGGGGTCA
CCAGTGCGGCCCAAAAAGCCGAGTTCGCGGCCAAGCCGGAACTTAACTTCGCGGTGTCCGAGCCGGGCCTGGGGCGTTTC
CGCATCAACGCCTTTAAACAGCGCGGCGAGGTCAGCATCGTCGCCCGTGCCATCAAGACCGACATACCCAGCATTGCGTC
GTTGGGGTTGCCGCCGCTGCTAAAACAGTTATCGATGGCGCCACGCGGCCTGATCTTATTCGTTGGTGCCACCGGCAGCG
GCAAATCAACCTCGTTGGCGTCGATGGTCGACTACCGCAATGCCAATGCGGCCGGGCACATCATCACCATCGAGGATCCG
ATTGAATTTGTTCACGCGCACAAGCAATCGGTGGTCAACCAGCGCGAGGTCGGGATGGACACCGACACCTACCAGGACGC
CCTCGAAAACACCCTGCGCCAGGCCCCGGACGTCATTTTGATCGGCGAAATTCGAACCCGTGAAACCATGGAACACGCGA
TCGCCTTTGCCGAAACGGGCCACCTGTGCCTGTCGACCTTGCACGCCAATAACGCCAATCAAGCCTTGGATCGCATTATT
AACTTTTTCCCCGAGGAGCGACGCGACCAGTTGCTGATGGACCTGTCATTGAACTTGCGCGGGATTGTGTCCCAGCGTTT
GGTTAAAACGGTTAGCAGTGCGCGCACCGCCGCGGTCGAAATTCTATTGGGCACACCCCGGGTCAGCGACTTGATACGTC
AGGGCGAGGTGGGACTGCTCAAAGAAGCCATGGAGCAGGCCGGAACCGAGGGCATGGTGACCTTTGATGCGGCGCTGTTG
GCGTTATGGAAATCAGGGGCCGTTAGCCTGGACGAGGCGCTGCGCAATGCGGACAGTGAAAACAACCTGCGTTTGGCCAT
TAATCTGGTCGAGCAGCGCCAAGCGGACGGCAGCGATGCCGGTTGGTCATTGACGCCAAACCAAGAGGCCCCGGGCCAGC
GGTTGCGTTGA
ATGACATTACTGACTTGGTTACGTGAACTGGACACCCGTCAGGGTTCGGACCTTTACCTGTCGACGGCAGCACCGGCGAC
CGTGCGGGTTAACGGGGTGATGCAGCCGATCGGCGAGCCGCTGGCCACTGGTGCCGTCGCGGGGCTGTTAGCCGGGGTCA
CCAGTGCGGCCCAAAAAGCCGAGTTCGCGGCCAAGCCGGAACTTAACTTCGCGGTGTCCGAGCCGGGCCTGGGGCGTTTC
CGCATCAACGCCTTTAAACAGCGCGGCGAGGTCAGCATCGTCGCCCGTGCCATCAAGACCGACATACCCAGCATTGCGTC
GTTGGGGTTGCCGCCGCTGCTAAAACAGTTATCGATGGCGCCACGCGGCCTGATCTTATTCGTTGGTGCCACCGGCAGCG
GCAAATCAACCTCGTTGGCGTCGATGGTCGACTACCGCAATGCCAATGCGGCCGGGCACATCATCACCATCGAGGATCCG
ATTGAATTTGTTCACGCGCACAAGCAATCGGTGGTCAACCAGCGCGAGGTCGGGATGGACACCGACACCTACCAGGACGC
CCTCGAAAACACCCTGCGCCAGGCCCCGGACGTCATTTTGATCGGCGAAATTCGAACCCGTGAAACCATGGAACACGCGA
TCGCCTTTGCCGAAACGGGCCACCTGTGCCTGTCGACCTTGCACGCCAATAACGCCAATCAAGCCTTGGATCGCATTATT
AACTTTTTCCCCGAGGAGCGACGCGACCAGTTGCTGATGGACCTGTCATTGAACTTGCGCGGGATTGTGTCCCAGCGTTT
GGTTAAAACGGTTAGCAGTGCGCGCACCGCCGCGGTCGAAATTCTATTGGGCACACCCCGGGTCAGCGACTTGATACGTC
AGGGCGAGGTGGGACTGCTCAAAGAAGCCATGGAGCAGGCCGGAACCGAGGGCATGGTGACCTTTGATGCGGCGCTGTTG
GCGTTATGGAAATCAGGGGCCGTTAGCCTGGACGAGGCGCTGCGCAATGCGGACAGTGAAAACAACCTGCGTTTGGCCAT
TAATCTGGTCGAGCAGCGCCAAGCGGACGGCAGCGATGCCGGTTGGTCATTGACGCCAAACCAAGAGGCCCCGGGCCAGC
GGTTGCGTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
52.219 |
100 |
0.532 |
| pilU | Vibrio cholerae strain A1552 |
51.576 |
92.819 |
0.479 |
| pilU | Acinetobacter baylyi ADP1 |
52.187 |
91.223 |
0.476 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.424 |
96.543 |
0.41 |
| pilT | Pseudomonas aeruginosa PAK |
40.643 |
90.957 |
0.37 |
| pilT | Pseudomonas stutzeri DSM 10701 |
40.058 |
90.957 |
0.364 |