Detailed information NTG0039600

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SGGB_RS11635
• Genome accession: NC_017576
• Coordinates: 2347910..2349004 (+)
• Length: 364 a.a.
• NCBI ID: WP_009855213.1
• Uniprot ID: -
• Organism: Streptococcus gallolyticus subsp. gallolyticus ATCC 43143
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2342910..2354004

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGGB_RS11610 (SGGB_2281)	pgsA	2343335..2343889 (-)	555	WP_009855208.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SGGB_RS11615 (SGGB_2282)	-	2343899..2344843 (-)	945	WP_009855209.1	helix-turn-helix domain-containing protein	-
SGGB_RS11620 (SGGB_2283)	yfmH	2344907..2346196 (-)	1290	WP_009855210.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SGGB_RS11625 (SGGB_2284)	yfmF	2346197..2347441 (-)	1245	WP_009855211.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SGGB_RS11630 (SGGB_2285)	yaaA	2347530..2347907 (+)	378	WP_012962646.1	S4 domain-containing protein YaaA	-
SGGB_RS11635 (SGGB_2286)	recF	2347910..2349004 (+)	1095	WP_009855213.1	DNA replication/repair protein RecF	Machinery gene
SGGB_RS11640 (SGGB_2287)	-	2349067..2349933 (-)	867	WP_009855214.1	GRP family sugar transporter	-
SGGB_RS11645 (SGGB_2288)	guaB	2350173..2351654 (-)	1482	WP_009855215.1	IMP dehydrogenase	-
SGGB_RS11650 (SGGB_2289)	trpS	2351915..2352937 (-)	1023	WP_009855216.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 41763.80 Da
• Isoelectric Point: 6.9437

>NTDB_id=39600 SGGB_RS11635 WP_009855213.1 2347910..2349004(+) (recF) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MWIQKITLKNYRNYLTSELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRTDKELIHFDAKELLVSGILQRSSGT
VPLDISLSSKGRVTKVNHLKQAKLSDYIGVMTVVLFAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLADLSNYNHVLKQR
NTYLKTAEKVDTDFLAVLDEQLADFGSRVMEHRLDFISNLEKEADRYHYAISNGVEHLSIHYLSSVSFQEKDDIKPNFLK
ALQKNHQRDIFKKNTSVGPHRDDLEFFINDMPANFGSQGQHRSLILSLKMAEIELIKTVTGDYPILLLDDVMSELDNYRQ
TELLKMIIDKNVQTFITTTSLDHLSQLPDELKIFTVNQGNIQEN

Nucleotide

• Length: 1095 bp

>NTDB_id=39600 SGGB_RS11635 WP_009855213.1 2347910..2349004(+) (recF) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGTGGATTCAAAAAATAACGTTAAAAAATTATCGTAACTATCTGACTAGTGAGCTTGAATTTTCTCCTGGACTTAATGT
TTTCATCGGAAAAAACGCTCAAGGAAAGACAAATTTCTTAGAAGCAATTTATTTCCTTTCTCTTACCCGCAGCCACCGCA
CACGAACAGACAAAGAGTTGATTCATTTTGATGCCAAAGAACTTCTGGTTTCTGGTATTTTACAACGTTCAAGTGGTACT
GTTCCTTTAGATATTAGTCTTTCAAGTAAGGGACGTGTTACAAAAGTTAATCATCTAAAACAAGCTAAGTTATCAGACTA
TATTGGTGTAATGACCGTTGTTCTTTTTGCACCTGAAGATTTACAACTCATCAAAGGCGCTCCAAGCCTTCGTCGAAAAT
TTATTGACATTGATTTAGGGCAAATAAAGCCGATTTATTTAGCTGATTTGTCTAATTATAACCACGTGCTAAAACAGCGT
AATACTTATCTTAAAACGGCTGAAAAAGTTGATACTGATTTTTTAGCTGTGCTTGATGAGCAATTAGCTGATTTTGGTAG
CCGTGTCATGGAACATCGTTTAGATTTCATTTCTAATTTAGAAAAAGAAGCCGACCGCTATCATTATGCCATTTCAAACG
GCGTTGAACATCTTAGTATCCATTATCTGTCATCTGTTTCCTTCCAAGAAAAGGATGACATTAAGCCAAATTTCTTAAAA
GCTTTACAAAAAAATCATCAGCGTGATATTTTCAAAAAGAATACAAGTGTTGGTCCCCACCGTGATGATTTAGAATTTTT
CATCAATGATATGCCAGCAAATTTTGGCAGCCAAGGTCAGCACCGTAGCCTAATCTTATCACTAAAAATGGCTGAAATTG
AGTTAATAAAAACAGTAACTGGTGATTATCCTATTTTACTTTTAGATGATGTCATGAGCGAGCTTGATAATTACAGACAA
ACCGAACTCTTAAAAATGATTATTGATAAAAACGTTCAAACCTTCATTACAACAACAAGCCTCGACCACCTATCACAGCT
TCCGGACGAGTTAAAAATCTTTACAGTTAATCAAGGTAACATTCAAGAAAATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	64.835	100	0.648
recF	Bacillus subtilis subsp. subtilis str. 168	46.705	95.879	0.448